BtaINT0031605 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103879036-103879907:-
Coord C1 exon
chr11:103879782-103879907
Coord A exon
chr11:103879099-103879781
Coord C2 exon
chr11:103879036-103879098
Length
683 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCTGCCCCCTCTGCCTGCAGGCC
3' ss Score
12.79
Exon sequences
Seq C1 exon
AGCGCGGAGGAGAAGGAGACGTTGGAGCTGCAGTGCCTGGCCCTGCGGAGGGACTCCAAGATGTACAAGGACCGCATCGAGGCCATCCTGCAGCAGATGGAGGAGGTCGCCATTGAAAGGGACCAG
Seq A exon
GTAGGGCCATGCCAGCCTTTCGGGGGAGGCGGTCGTCAAGGCAGCCTTTAATGAGCTCCGACAGAAGCGGTTCCTGCTCCTTCAAAGCCATGAGCGCTGACACAGGGGTGTGTGGCTTAGCTTCAGGGATCGTCGCTGGAGACAGAGGCTGGCTTTCTCCAAGTCTTCCTGCAGCCGCGGCCTCCCTGGCTGGTCACTTCGGGCCAGCTGCCTGGGCTGACCTCAGCGTCTCCATTGAGGAGGGCGGGCGTGAGAGCACATGGGGTGTTCGCTCTGAAGAACATCACACGGCCGTCAACGATTGTGTTCTCGGTGCCAAGTGCGCCCGTGAAACAGGAAACGCGGGAGCAGGGTGGCCGGGGGCACTTCGGGGGAGGCGGTCCTCACTTCCCGTAGTGAACCTGGGTCGTGTTTACAAACGCCCCAAACGTGAGCGCTGTCCTCAGAGAAGAGGGGAAGGGGCCGCCGCTGGCCCTGCCTGGCCCCTCCGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTTGCCCTGCCCCCTCTGCCTGCAG
Seq C2 exon
GCCACCCTGATGCGGGAGGACATAAAGCGCAGCATGCACGCAGCCTGCAGGACAAGGACGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572:ENSBTAT00000008634:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGAAGGAGACGTTGGA
R:
CGCGTCCTTGTCCTGCAG
Band lengths:
183-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development