RnoINT0029387 @ rn6
Intron Retention
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3801471-3802938:-
Coord C1 exon
chr3:3802813-3802938
Coord A exon
chr3:3801663-3802812
Coord C2 exon
chr3:3801471-3801662
Length
1150 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GGCCTTGGCCATTCCTACAGGCT
3' ss Score
6.1
Exon sequences
Seq C1 exon
TGCATGGAGGAAAAGGAGATGTTCGAGCTGCAGTGCCTGGCCTTGCGCAAGGATGCCAAGATGTACAAGGACCGGATCGAGGCTATCCTGCAGCAGATGGAGGAAGTCTCCATTGAGCGGGACCAG
Seq A exon
GTGGGTGCCACACTTGCATTCAGAAACTGAGAACAAGCAGTGCTGGGGTATTGGTGTGGCAGCCTTTGGAGCTGCTGCGGCCAAAGCATTTTTTTTATTTATTTATGCTCAAGGTAACTTGGCAGTGTTGAAAGATAGAACCTGGGGCTGCTCGTACAAATGCAGTCAGGTCTAACCTTACTCAAAGGAAGAGCTTATGTAGCAGGAGAACACTGCAGTCCCGGTGCTGGATAGGGAGGGATAGGTGGGAGGGAGACTTCAGTAGGGGAGAGGAAGCTGCCAGATGCATAGGTTGGGGGTGGGGAGCATTTGGTACAAGAGCTGGTGGTGGTTCCCGGGTAGGGGCAGTGGTGACTCACTCACACCTGTAATCCCAGCACTTGCAGGTTGAGACAAAATAATTACTGTGAATTTAAGGGCAGCCTGATTTACAGTGAGTTCCAAGCCAGTTTGGGGCCCAATGTGAGACCCTGTCTCAAAAAGCCATGTTTAGTAGTACATGCCGGTTCCAGCATTTAGGGGTAAAGACAAGAGAATCATAAACTCAAGGCCATCCTCAGCTACCTAGTATATATGAGGCCAGCCTGGGATAAGAAAGAAAAAACACACATTGTGTTCATTTAAGGACAGCCATGGATCCTGCTTTTGATGTCAAGCAACATCCAGAATTTATAAAATATGTCCCATAGGAGGGACGGAAACACACACACACACACACACACACACACACACACACACTGTCTGCTGGGAATGTAGGACTTCTCAGTTGGGCTTCCTAGGAACTGACTTGTGTGTTAATCACAGAGGTTTTTGGCTGTTTCTTTGCAGTGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTCTGAGACGAAGTCTCATGCAACCCAATCTTGCCTCCAGATATGGCATTGAACTATTGATTCTGCTTCTGCCTCCCAAGTGCTAAGGTTCTGGGCCTGCCCTATTCCACCCAGTGTTTGTTCACTTGTACTTCGAGCCCCAATGCTTTGAGAATCCCTCCAGTTCAGCAACTCCAGCAGCACAGCAGGGTGGTTGATGTCCCGCCAGGACCTCTGGTAGGGGCCAAGACCTATACTGCCAAATGAGAGCCAAGGTCCCTTGCTGAGGGTGTGGCCTTGGCCATTCCTACAG
Seq C2 exon
GCTATGACCTCAAGGGAAGAGCTGCATGCACAGTGTGCCCAAAGCTTTCAGGACAAAGATAAGCTGCGAAAGCAGGTTCGAGAACTGGATGAGAAGGCCGACGAGTTGCAGCTGCAGCTGTTCCAGACCGAGAGCCGATTACTGGCCGCTGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470:ENSRNOT00000091484:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGGAGGAAAAGGAGATGT
R:
CAGGATGAGCATGTCCAATTGC
Band lengths:
318-1468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]