BtaINT0031607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103878499-103879033:-
Coord C1 exon
chr11:103878908-103879033
Coord A exon
chr11:103878541-103878907
Coord C2 exon
chr11:103878499-103878540
Length
367 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGC
5' ss Score
4.81
3' ss Seq
CCCCTATTCTGTGACCGCAGAGC
3' ss Score
7.33
Exon sequences
Seq C1 exon
CGGAAACAGGTCCGCGAGCTGAGTGAGAAGGTGGACGAGCTCCAGCTGCAGCTGTTCCAGCGCGAGGGCCAGTTGCTGGCCGTGGAGGGCAAGCTCCGGCGGCGGCAGCTAGACGCGCTCATCCTG
Seq A exon
GTGGGCCTCCGCAGGGTCAGCCCTGCCACGGGGGTGCTGGAGGGGGGTGGGGGGTGCAGCCACGCAGGAGCAGGTGTGTCCTGGAGGCCACAGAGCCCCGGGGAGGAGCCGCCAGGGGTCCCTGGCCCTTCCTGAGCCCCTCCTCTCTCCGGAAGGTTGGCTCCTCGCCGAGCCCCCCTGGAGGGTTGCTGCAGGGCTGGCGCAGCTCAGGGCTGGGCACGATGAGCGGGCAGGGAGGTACATTCTGGCCAGGCCCAGCCGGGAGGAGCTTCCTTGGTGGGGGGCCTGGCCCGGGACCCCACCCCACGCCCAGGAGTGGCTCGGTTCCCTCACAGCCTGCTGACAGACCCCTATTCTGTGACCGCAG
Seq C2 exon
AGCTCTGATCTAGAGGACAGCTCACCCAGGAATTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572:ENSBTAT00000008634:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development