GgaINT0125934 @ galGal4
Intron Retention
Gene
ENSGALG00000001889 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr17:7912561-7913265:+
Coord C1 exon
chr17:7912561-7912752
Coord A exon
chr17:7912753-7913223
Coord C2 exon
chr17:7913224-7913265
Length
471 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
ACTTACTGGTTTTATTTCAGACT
3' ss Score
7.73
Exon sequences
Seq C1 exon
GCACTGCTGACCAGAGAACAGTTCTACACACAGTACTCCAAGAACCTTGTTGAGAGGGACACCTATCGGAAGCAGATTCGGGAGCTGGGGGAGCGATGCGATGAGCTGCAGCTGCAGCTCTTCCAAAAGGAGGGTCAGCTACTGGCTACTGAAGCCAAGCTGAAAAGACTGCAACTGGAGCTGCCTGCACTG
Seq A exon
GTATGCCTGTGGGGTTGTCATGCGTATGATGAGTTGGAAAGTTGAGTCTAGGACTCAAATAAGACTGTTTTGAGCCCTTGAGACGTAACCAGTCTGATTTCAGCAAGCAGTGGCCACCTGCTTGGGTAACCATTTCTGTGCACATGCTGTTTAGAAAAAAGGAAGACATGACAGTTCTTATGAGCTCACCCTGGTTTGCTGAAGCCTTACATGTGTGGAGTGCTTCCAGAGATCATAAAGGTGTTGTCACCTACTAAAGACTGAGCTCTGGAGTCTGTACAAGCCGTTTGGATGAAATAGGAGCAGGGTATGAGAGTCCATGGAATTAAATTAGACATCTGAGGACTTTTAATTAGTGTGGCATCTTATGTACTTTCTCCAAATGGTCAGATGAGTGTAGGTCTCCTGTATATTCCATTACTGCCATTTCCTTGCTCATGAAGAATGATGAACTTACTGGTTTTATTTCAG
Seq C2 exon
ACTTCTGACCTGGATGACACCTCCTCCAGAGATTCCCAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889:ENSGALT00000002925:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCTGACCAGAGAACAG
R:
CCTGGGAATCTCTGGAGGAGG
Band lengths:
232-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]