GgaEX0002300 @ galGal4
Exon Skipping
Gene
ENSGALG00000001889 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr17:7911747-7915356:+
Coord C1 exon
chr17:7911747-7911896
Coord A exon
chr17:7913877-7913922
Coord C2 exon
chr17:7915286-7915356
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTGTGTCCCAATAGCTT
3' ss Score
8.56
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CAGGTTGCCAGGGAACAGAATTTGGAGACGAGTCTCTCCCATGAGACTGTGCAGAATGACTGCAGCCAGGTGCTGGAGCGCCAGGACCTGCTGAACACCCTGTACCACCTTCGCAAGGAGCTGCGCCAAGCCGAGGTGCTTCGAGACAAG
Seq A exon
CTTACTCTACATGGTCATCTAGACGAAGATTCGCACCTGACTAAAA
Seq C2 exon
AAGACTGCTGTAAAGGACAAACCCAGCAATTCAGCATGCAAGAAAGCAATCTGACTGCAGAGTCACCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889_MULTIEX1-4/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.300 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATGACTGCAGCCAGGTG
R:
CTTGCATGCTGAATTGCTGGG
Band lengths:
141-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]