GgaINT0125936 @ galGal4
Intron Retention
Gene
ENSGALG00000001889 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr17:7913877-7915083:+
Coord C1 exon
chr17:7913877-7913922
Coord A exon
chr17:7913923-7915023
Coord C2 exon
chr17:7915024-7915083
Length
1101 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
CACAAGCAGAAATTAGACAGATG
3' ss Score
-11.1
Exon sequences
Seq C1 exon
CTTACTCTACATGGTCATCTAGACGAAGATTCGCACCTGACTAAAA
Seq A exon
GTAAGGCTTTTATTGGGGAAAACATACAGTACAGTTCTTGCTCAGTGTTCAGAGGGACAGGGACAGACGTGCTTTTTATTTTAGTGCAGAAGAGGTGCACTGACTGAGGATTCAATCTGTGAGCGATGCTTCTCAGTGGGCATGCCTGGCACCTCAAGATGACTCAGAATAGGTGCACGTAAATCAAGGCTGCTTGAACTCCAAGGCACTCTGCCTTCCTTCTCACCTACAAAAAAGGAAAACATGCTCCCAGCATCTGAGAACAGTGAATACTTGTAGAGCTTTTTGGAGGGAAGAATCTCCACGTATTATTTACTTTGTGGTCTCTGAAATGGTCTTTTGTACAGGTGAATGACTTGGCAGAAGTGGTGTTGTTTGACCACCTTAGGTCCTTGAGTCTTTGTTCAGTCATCTGCCTTCTGAATTTGTCCAGCCAAAATCACCTGGTACTCAGTGCCTTCGAGAAACAGCTCCTGGGTGCCTCTCCTTCACACAGTCCTCTTGTGTTCCATGCTCAGCTCAGCCACAGACAAGTGTCCTTCCACCCCAGCTGAACCATGTGTCTTTCTCCAGAGACATTTCTTTCCTCTCTTTTGTGAACATAGCCTGCAATGTAAAAGCAGAACCATGTAATTAATACTGGCCCTGGTTCTGTTTTTGTGGCAGCCCCAGTGGAAATGATTCAGCAGTGTGCAGAAGAATAAACAGGGTCCTTTAAAGCTTAAGATTCTCCTTCAAAACACATTGCAAAAGGAAGGAAACAAGCAAAGATCCTCTCTTGAAAGATTGAAGCTATCATCCATTGAGATGGAAGATTTTTCACTGAAGCTACTACACTGAAACAGAAAGCCTTTTCTTGCTCTGTCTCACTCAGATCAAAATTACCTACCACAGTATCTGATCACTGCTTTAGGAGCTTTGCTAAAATACGATCTGTTGAGTATCTTAATATGCACATCTGAGCTGCTGGGGAACAGGGACAAATTGTGATTAATGTTCAGTGTGATTTCTTATTGTTATCTCCATTCTTCTTAGTGATGTTAGACAGAGGTGCTGCTCTGCACTGGTTCATTTTCTCCTCCACAAGCAGAAATTAGACAG
Seq C2 exon
ATGGTGTCGCTGGTGATCCTATGGGGAATTCCATCACCCTAAGCAAGACTCAGAGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889:ENSGALT00000002925:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.762
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]