GgaEX0002297 @ galGal4
Exon Skipping
Gene
ENSGALG00000001889 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr17:7911747-7916070:+
Coord C1 exon
chr17:7911747-7911896
Coord A exon
chr17:7912316-7912441
Coord C2 exon
chr17:7915988-7916070
Length
126 bp
Sequences
Splice sites
3' ss Seq
CACAAGCCGTGTCTCAACAGTAT
3' ss Score
4.69
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
CAGGTTGCCAGGGAACAGAATTTGGAGACGAGTCTCTCCCATGAGACTGTGCAGAATGACTGCAGCCAGGTGCTGGAGCGCCAGGACCTGCTGAACACCCTGTACCACCTTCGCAAGGAGCTGCGCCAAGCCGAGGTGCTTCGAGACAAG
Seq A exon
TATGCAGAGGAAAAAGAAATACTTGAACTACAGTGCACATCTCTGAGGAAGGACTCCCAGATGTATAAAAAACGGATGGAAGCTGTCTTAGAGCAGATGGAGGAAGTGGCTTCGGAAAGAGACCAG
Seq C2 exon
TTCGAGGAGTGCAGCTCAGCCCACGAGGAGCTGTCCGAGAAGGAGCGGAGGAGGATGAAGGACTGCTTTGAGCGTTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889_MULTIEX1-1/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.300 A=0.024 C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGCCAGGGAACAGAAT
R:
GGTAACGCTCAAAGCAGTCCT
Band lengths:
229-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]