HsaEX0012457 @ hg38
Exon Skipping
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr9:136367637-136370437:-
Coord C1 exon
chr9:136370294-136370437
Coord A exon
chr9:136369750-136369875
Coord C2 exon
chr9:136367637-136367828
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGAGCTGCCGCCCCCTGCAGTGC
3' ss Score
7.01
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAGGGGAAGCTGGACAGGAGCAGCCCCTACATCCAGGTACTGGAGGAGGACTGGCGGCAGGCGCTGCGGGACCACCAGGAGCAGGCCAACACCATCTTCTCCCTGCGCAAGGACCTCCGCCAGGGCGAGGCCCGACGCCTCCGG
Seq A exon
TGCATGGAGGAGAAGGAGATGTTCGAGCTGCAGTGCCTGGCACTACGTAAGGACTCCAAGATGTACAAGGACCGCATCGAGGCCATCCTGCTGCAGATGGAGGAGGTCGCCATTGAGCGGGACCAG
Seq C2 exon
GCCATAGCCACGCGGGAGGAGCTGCACGCACAGCACGCCCGGGGCCTGCAGGAGAAGGACGCGCTGCGCAAGCAGGTGCGGGAGCTGGGCGAGAAGGCGGATGAGCTGCAGCTGCAGGTGTTCCAGTGTGAGGCGCAGCTACTGGCCGTGGAGGGCAGGCTCAGGCGGCAGCAGCTGGAGACGCTCGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796-'8-9,'8-7,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.243
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCTACATCCAGGTACT
R:
CCTCACACTGGAACACCTGC
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development