BtaEX6047156 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103879036-103880160:-
Coord C1 exon
chr11:103880017-103880160
Coord A exon
chr11:103879782-103879907
Coord C2 exon
chr11:103879036-103879098
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTAGCTGGCGTCTTCCGCAGAGC
3' ss Score
8.62
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGGGGAAGGCGGACCCGGGCCGCCCCCACGTCCAGGTGCCAGAGGAGGACTGGCAGCGGGTGCAGCGGGACCTGCAGCAGCAGGCCGCCACCATCTTCTCCCTGCGCAAGGACCTGCGCCAGGCCGAGGCCCTACGCACCCGG
Seq A exon
AGCGCGGAGGAGAAGGAGACGTTGGAGCTGCAGTGCCTGGCCCTGCGGAGGGACTCCAAGATGTACAAGGACCGCATCGAGGCCATCCTGCAGCAGATGGAGGAGGTCGCCATTGAAAGGGACCAG
Seq C2 exon
GCCACCCTGATGCGGGAGGACATAAAGCGCAGCATGCACGCAGCCTGCAGGACAAGGACGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.000 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCCAGGTGCCAGAGG
R:
CGCGTCCTTGTCCTGCAG
Band lengths:
178-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]