DreEX0018938 @ danRer10
Exon Skipping
Gene
ENSDARG00000067672 | card9
Description
caspase recruitment domain family, member 9 [Source:ZFIN;Acc:ZDB-GENE-060531-94]
Coordinates
chr5:50512128-50513700:-
Coord C1 exon
chr5:50513557-50513700
Coord A exon
chr5:50513342-50513467
Coord C2 exon
chr5:50512128-50512316
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTTTTCAAAATGAAGTAT
3' ss Score
0.42
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GTTCAAACTCCTGAGCAGGAAAAGCCTGATTCACAGACATTAGAGGATTTCAAGCAACAAAGTCAGGCACAATACCAAGAGCTGGTGAATGATCTCTACAATCTAAGAAGAGATCTTCATGATGCAGAAAAGCTGCGTGATAAG
Seq A exon
TATCGAGAAGAGAAGGATGAGTTAGAACTTAAGTGCTTAATGCTAAAGAAGGACTCTAAGATGTATGGAGACCGAATGGAAGACATTCTGAAACAGCTGGAAGAGGTGATCAAAGAAAGAGACAAG
Seq C2 exon
GCTATTTGTACGAGAGAGGAGTACCATCTGGAAAACTCAAAAAATCTCCAAGACAAAGACCAGTACCGCAAGCAGATCCGGGAAATGGGAGAACGCTATGATGAACTTCAAGTCCAGTTGTTTCGAACTCAAGGAGAAGTTCTTGCTCTTCAAGCTACACTTCGCAAACAGAAGAGCCCCATTCGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067672-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
PF115593=ADIP=PU(32.1=83.3)
C2:
PF115593=ADIP=FE(56.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGCTGGTGAATGATCTCT
R:
GGGCTCTTCTGTTTGCGAAGT
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]