RnoEX0016917 @ rn6
Exon Skipping
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3801471-3803349:-
Coord C1 exon
chr3:3803206-3803349
Coord A exon
chr3:3802813-3802938
Coord C2 exon
chr3:3801471-3801662
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGAGCGGTGCTTCCTGTAGTGC
3' ss Score
5.27
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGGGTAAGCTACACAGGAATAGCCCATACATCCAGGTGCTGGAGGAGGACTGGCGTCAGGCACTGCAGGAACACCAGGAGCAGGCCAGCACCATCTTCTCCCTACGAAAGGACCTCCGCCAGGCTGAGGCCCTCCGGACCCGG
Seq A exon
TGCATGGAGGAAAAGGAGATGTTCGAGCTGCAGTGCCTGGCCTTGCGCAAGGATGCCAAGATGTACAAGGACCGGATCGAGGCTATCCTGCAGCAGATGGAGGAAGTCTCCATTGAGCGGGACCAG
Seq C2 exon
GCTATGACCTCAAGGGAAGAGCTGCATGCACAGTGTGCCCAAAGCTTTCAGGACAAAGATAAGCTGCGAAAGCAGGTTCGAGAACTGGATGAGAAGGCCGACGAGTTGCAGCTGCAGCTGTTCCAGACCGAGAGCCGATTACTGGCCGCTGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCACCATCTTCTCCCTA
R:
TGAGCATGTCCAATTGCTGCT
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]