MmuEX6099700 @ mm9
Exon Skipping
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26210853-26212848:-
Coord C1 exon
chr2:26212705-26212848
Coord A exon
chr2:26212278-26212403
Coord C2 exon
chr2:26210853-26211044
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGAGTGGTGCTTCCTGTAGTGC
3' ss Score
4.53
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAGGGTAAGCTAGACAGGAATAGTCCATACATTCAAGTGCTGGAGGAGGACTGGCGTCAAGCACTGCAGGAACACCAGAAGCAGGTCAGCACCATCTTCTCCCTACGGAAGGACCTCCGCCAGGCTGAGACCCTCCGGGCCCGG
Seq A exon
TGCACGGAAGAAAAGGAGATGTTCGAGCTGCAGTGCCTGGCCTTGCGCAAGGATGCCAAGATGTACAAGGACCGTATCGAGGCTATCCTGCTGCAGATGGAGGAGGTCTCCATTGAGAGGGACCAG
Seq C2 exon
GCTATGGCCTCCAGGGAAGAGCTGCATGCACAGTGTACCCAAAGCTTTCAGGACAAAGATAAGCTTCGAAAGCTGGTTCGAGAGCTGGGTGAGAAGGCAGATGAGCTGCAGCTACAGCTGTTCCAGACGGAGAGCCGATTACTGGCCGCCGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTCAGCACCATCTTCTC
R:
TGTCCAATTGCTGCTGCTTGA
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: