GgaINT0125935 @ galGal4
Intron Retention
Gene
ENSGALG00000001889 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr17:7913224-7913922:+
Coord C1 exon
chr17:7913224-7913265
Coord A exon
chr17:7913266-7913876
Coord C2 exon
chr17:7913877-7913922
Length
611 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
ATTTGTTTGTGTCCCAATAGCTT
3' ss Score
8.56
Exon sequences
Seq C1 exon
ACTTCTGACCTGGATGACACCTCCTCCAGAGATTCCCAGGAT
Seq A exon
GTGAGTAGGGTGCCTTGTTTACGTTTTATTTTCTCCTGGGATGGTTTCAAATTCCTCAGTTGTGGTTAATTCCCAAAGTAACAGCAGTCTGCGCTCCATGGGTCAGGCTCATGGCAAGGACATCAAGTCCAGAGGTAGCAAAGCAGGCTAACAGCTAAGGGTAGCTTCTCCTTGTGTCCTGAGACTTCTAAGCGTGGGGATGCTGCTGTGATGAGATTTGTTGAGTCCAAGCAGACCAGAAGGTTCAAATTATTTTGCATTGCTTCTAATGCCTCTCTTGTGAGAGAACAGGCAAAAATAAGTATTATCCTGAGAACATGTGTGGTAAAGGGTTGTTTTTTTTTTCAACTCAGTTCATAACTTAATTGTGGTAGAGGTTGTCACATTGTCTGGAGACAAAATGTATGAGGCCACAGTCATGGAGGATAAGTCTGTGTGTAGATACGCAGCTTCTAGTTCAGAATGTTTCCTGTTTTGCTTACAGCAAGACGCAATGGGGAAGGTCGGTTATATACCTGTGTTGTCCTGTGTTCCTGCAATTGTTCCTAGCTGCTGTCTGAGAAAGAATAAGGAGTACTTCTCATGATCTTAATTTGTTTGTGTCCCAATAG
Seq C2 exon
CTTACTCTACATGGTCATCTAGACGAAGATTCGCACCTGACTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889:ENSGALT00000002925:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]