BtaINT0031596 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103878180-103878540:-
Coord C1 exon
chr11:103878499-103878540
Coord A exon
chr11:103878226-103878498
Coord C2 exon
chr11:103878180-103878225
Length
273 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GCCCCATGTCTCTTGGGAAGTTC
3' ss Score
3.1
Exon sequences
Seq C1 exon
AGCTCTGATCTAGAGGACAGCTCACCCAGGAATTCCCAGGAG
Seq A exon
GTGAGCATGACTGCAGGTCAGGCCCGCGCGGGCTTCACCGGACGCTCTGGGCCACAGCCTACGCCAGACCACAGTCCCGTACGCGAAGCTCTGGGAGCTTGGCTGTGCACTGCCTGCCCTCTGCTCCGTGCCCACCTAGGCAGCATAGGTCCCTCCCTGAGAGGCTGGCACCGGGGGACGGTGGTGGGGACCGCAACCCGGGGTGGGCAGCATGGACCATCAGGCCCGCTCCCGGCAGGGCGGCGGTCTGATCGCCCCATGTCTCTTGGGAAG
Seq C2 exon
TTCTTGCTCCCTCAGGATCTGGAGGATACCCAGCTCTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572:ENSBTAT00000008634:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development