HsaINT0027765 @ hg19
Intron Retention
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:16391]
Coordinates
chr9:139261252-139261709:-
Coord C1 exon
chr9:139261668-139261709
Coord A exon
chr9:139261298-139261667
Coord C2 exon
chr9:139261252-139261297
Length
370 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATCTTGACTCTCTTTGGAAGCTC
3' ss Score
4.22
Exon sequences
Seq C1 exon
AGCTCCGACCTGGAAGATGGCTCACCCAGGAGGTCCCAGGAG
Seq A exon
GTGAGTGAGACCCCAGCCAGCACGAGGCTGGCCTTCCTTCACCTGGGGTCCTGGCTGAGCTGCCACCAGGCATAGCCCCACACTGCCCGTCACATGGCCCTGCTCGGTGGGCTGGGCTGGGTGGAGGAAGAGCAGGTGGCCAAATGCTAAGGCCTCTGATGGCTCAAGGGGTAAGGTAAGGCACGGACAGTGCCCACCTCCTGGCCGCCCAATGTCCGTCTGCTGGGCACCTGAGTCTCTGAGAAGCTCTGTGCAGGGGGTGACGGCAATGGCTGCACCCAGCTGAGGGCCAAGGGCTGGGGTGGGCAGTGTGGCCGGGTCCAGTCCTTGGCGAAGTGGCCTAATGGGACATCTTGACTCTCTTTGGAAG
Seq C2 exon
CTCTCACTCCCCCAGGACCTGGAGGACACCCAGCTCTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796-CARD9:NM_052813:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)