GgaINT0125932 @ galGal4
Intron Retention
Gene
ENSGALG00000001889 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr17:7911747-7912441:+
Coord C1 exon
chr17:7911747-7911896
Coord A exon
chr17:7911897-7912315
Coord C2 exon
chr17:7912316-7912441
Length
419 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
CACAAGCCGTGTCTCAACAGTAT
3' ss Score
4.69
Exon sequences
Seq C1 exon
CAGGTTGCCAGGGAACAGAATTTGGAGACGAGTCTCTCCCATGAGACTGTGCAGAATGACTGCAGCCAGGTGCTGGAGCGCCAGGACCTGCTGAACACCCTGTACCACCTTCGCAAGGAGCTGCGCCAAGCCGAGGTGCTTCGAGACAAG
Seq A exon
GTGTGTGGTGCAGTACAAATCCCTGCTGGGGGTCAGTGGGGGTGAGATGGGCAAATTAAGCACTTAGTGTCTTACCAGTGAAGCACCAGAGCTGCTCAGCAGCAGTCCCTGCTGCTTCTACTCTAAGGCGTGTTAATATGCCAGTGGTCTGTGTCTGTGATGTTAACTGTGTTACCTGTTGATGCCCATGCCTCAGCCTGCAGGGTGATGGGAGCTTTTATCGTGATTGTCAGCTCAGGTACATGTAAATCTGTTGTGTTAGCAGGCTTTCTAGTCATACTACCCAGTCGTCTTGTTGGCTTTGCTCCAAAAGGGCAGTCTGGGCTTGATAGTGCAGGGAAGTCTGTAGTGATCTGTGGCATAGAGCAGAAGTGGCAAGCTTCTAGCTTGGGCTCACCTCACAAGCCGTGTCTCAACAG
Seq C2 exon
TATGCAGAGGAAAAAGAAATACTTGAACTACAGTGCACATCTCTGAGGAAGGACTCCCAGATGTATAAAAAACGGATGGAAGCTGTCTTAGAGCAGATGGAGGAAGTGGCTTCGGAAAGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889:ENSGALT00000002925:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGCCAGGGAACAGAAT
R:
CTGGTCTCTTTCCGAAGCCAC
Band lengths:
276-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]