HsaINT0027762 @ hg38
Intron Retention
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr9:136369750-136370437:-
Coord C1 exon
chr9:136370294-136370437
Coord A exon
chr9:136369876-136370293
Coord C2 exon
chr9:136369750-136369875
Length
418 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
3' ss Seq
TGAGCTGCCGCCCCCTGCAGTGC
3' ss Score
7.01
Exon sequences
Seq C1 exon
GAGGGGAAGCTGGACAGGAGCAGCCCCTACATCCAGGTACTGGAGGAGGACTGGCGGCAGGCGCTGCGGGACCACCAGGAGCAGGCCAACACCATCTTCTCCCTGCGCAAGGACCTCCGCCAGGGCGAGGCCCGACGCCTCCGG
Seq A exon
GTAGGAGGGCAGGCGGGGAGACATGGCCCCTGGGGTCCAAGCCAGGCTGGACGGGCTGAGCTCCGCCCACTCCGTGCCTGGAAGGTGGGGTGTGGAGACCCCAGTGCAGCGCCTCCACTCACCCACTCCTGGAGGCACAGTGGACGGTGCCCTCTCCTTGCCCGCCTGCCCCCCATGGCAAAGGCCAACCTCTGGGCTCATGGTGCCTGAGGCACAGCAGTGTCTGAGGCCTGCCGGAGGGCCCTGTCCTGCCGCGGTCTGGAAGTGCAGGGCTGGTAGGGGCCTGGGGACTCCTATGGCCTCCCCCGACATCCCAACTGGCCTGACCACATGCTTCTGAGCCCCTGCCCGGAGTATACCCCAAGGGCCAGAATGGGGGGCCTCAGGCCTGTGGGGGCTGAGCTGCCGCCCCCTGCAG
Seq C2 exon
TGCATGGAGGAGAAGGAGATGTTCGAGCTGCAGTGCCTGGCACTACGTAAGGACTCCAAGATGTACAAGGACCGCATCGAGGCCATCCTGCTGCAGATGGAGGAGGTCGCCATTGAGCGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796:ENST00000371734:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGAAGCTGGACAGGAG
R:
CTGGTCCCGCTCAATGGC
Band lengths:
270-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development