RnoINT0029386 @ rn6
Intron Retention
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3802813-3803349:-
Coord C1 exon
chr3:3803206-3803349
Coord A exon
chr3:3802939-3803205
Coord C2 exon
chr3:3802813-3802938
Length
267 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
CTGAGCGGTGCTTCCTGTAGTGC
3' ss Score
5.27
Exon sequences
Seq C1 exon
GAGGGTAAGCTACACAGGAATAGCCCATACATCCAGGTGCTGGAGGAGGACTGGCGTCAGGCACTGCAGGAACACCAGGAGCAGGCCAGCACCATCTTCTCCCTACGAAAGGACCTCCGCCAGGCTGAGGCCCTCCGGACCCGG
Seq A exon
GTAAGAGGCCAGGGCAGGCAAGCAATGCCCACTGGGATCCTGGATGGTGGGGTCTGGGACAGCTCACTGTCTCCCCTTTATCAATTCCTAGTACACGGTGGTGTGTCCACAGCTAAGGTCACCCTTTGGGCTTAGGTTAGCCTACTGTGGACTGGGACTCCAGTGTCTTCCTCATTACCCCAGCCAGCCTGGTCTTGTGTGCTCTGGGGCTGTTGTCTGTCCAGCTCGGGTAGGGGAGGGAGTGAGGCTGAGCGGTGCTTCCTGTAG
Seq C2 exon
TGCATGGAGGAAAAGGAGATGTTCGAGCTGCAGTGCCTGGCCTTGCGCAAGGATGCCAAGATGTACAAGGACCGGATCGAGGCTATCCTGCAGCAGATGGAGGAAGTCTCCATTGAGCGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470:ENSRNOT00000091484:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTAAGCTACACAGGAATAGCC
R:
CTGGTCCCGCTCAATGGAGA
Band lengths:
268-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]