DreINT0041429 @ danRer10
Intron Retention
Gene
ENSDARG00000067672 | card9
Description
caspase recruitment domain family, member 9 [Source:ZFIN;Acc:ZDB-GENE-060531-94]
Coordinates
chr5:50513342-50513700:-
Coord C1 exon
chr5:50513557-50513700
Coord A exon
chr5:50513468-50513556
Coord C2 exon
chr5:50513342-50513467
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
ATTTTGTTTTCAAAATGAAGTAT
3' ss Score
0.42
Exon sequences
Seq C1 exon
GTTCAAACTCCTGAGCAGGAAAAGCCTGATTCACAGACATTAGAGGATTTCAAGCAACAAAGTCAGGCACAATACCAAGAGCTGGTGAATGATCTCTACAATCTAAGAAGAGATCTTCATGATGCAGAAAAGCTGCGTGATAAG
Seq A exon
GTAGCCTTTGTTTCATATTTGATTCTAATAGAATCTTACTGTACTTTAATTTTTGTGATTTAAGATTGCATTTTGTTTTCAAAATGAAG
Seq C2 exon
TATCGAGAAGAGAAGGATGAGTTAGAACTTAAGTGCTTAATGCTAAAGAAGGACTCTAAGATGTATGGAGACCGAATGGAAGACATTCTGAAACAGCTGGAAGAGGTGATCAAAGAAAGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067672:ENSDART00000097471:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115593=ADIP=PU(32.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAACAAAGTCAGGCACA
R:
TGTCTTCCATTCGGTCTCCAT
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]