GgaEX0002300 @ galGal3
Exon Skipping
Gene
ENSGALG00000001889 | CARD9
Description
NA
Coordinates
chr17:8600846-8605169:+
Coord C1 exon
chr17:8600846-8600995
Coord A exon
chr17:8602976-8603021
Coord C2 exon
chr17:8605087-8605169
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTGTGTCCCAATAGCTT
3' ss Score
8.56
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CAGGTTGCCAGGGAACAGAATTTGGAGACGAGTCTCTCCCATGAGACTGTGCAGAATGACTGCAGCCAGGTGCTGGAGCGCCAGGACCTGCTGAACACCCTGTACCACCTTCGCAAGGAGCTGCGCCAAGCCGAGGTGCTTCGAGACAAG
Seq A exon
CTTACTCTACATGGTCATCTAGACGAAGATTCGCACCTGACTAAAA
Seq C2 exon
TTCGAGGAGTGCAGCTCAGCCCACGAGGAGCTGTCCGAGAAGGAGCGGAGGAGGATGAAGGACTGCTTTGAGCGTTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.300 A=1.000 C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCTGAACACCCTGTAC
R:
AGCAGTCCTTCATCCTCCTCC
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event