GgaEX0002298 @ galGal3
Exon Skipping
Gene
ENSGALG00000001889 | CARD9
Description
NA
Coordinates
chr17:8600846-8605169:+
Coord C1 exon
chr17:8600846-8600995
Coord A exon
chr17:8601660-8601851
Coord C2 exon
chr17:8605087-8605169
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGCCTCTTACACCAGGCA
3' ss Score
7.22
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
CAGGTTGCCAGGGAACAGAATTTGGAGACGAGTCTCTCCCATGAGACTGTGCAGAATGACTGCAGCCAGGTGCTGGAGCGCCAGGACCTGCTGAACACCCTGTACCACCTTCGCAAGGAGCTGCGCCAAGCCGAGGTGCTTCGAGACAAG
Seq A exon
GCACTGCTGACCAGAGAACAGTTCTACACACAGTACTCCAAGAACCTTGTTGAGAGGGACACCTATCGGAAGCAGATTCGGGAGCTGGGGGAGCGATGCGATGAGCTGCAGCTGCAGCTCTTCCAAAAGGAGGGTCAGCTACTGGCTACTGAAGCCAAGCTGAAAAGACTGCAACTGGAGCTGCCTGCACTG
Seq C2 exon
TTCGAGGAGTGCAGCTCAGCCCACGAGGAGCTGTCCGAGAAGGAGCGGAGGAGGATGAAGGACTGCTTTGAGCGTTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889_MULTIEX1-2/5=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.300 A=0.000 C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGCCAGGGAACAGAAT
R:
GGTAACGCTCAAAGCAGTCCT
Band lengths:
229-421
Functional annotations
There are 0 annotated functions for this event