RnoEX6015962 @ rn6
Exon Skipping
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3800966-3802938:-
Coord C1 exon
chr3:3802813-3802938
Coord A exon
chr3:3801471-3801662
Coord C2 exon
chr3:3800966-3801007
Length
192 bp
Sequences
Splice sites
3' ss Seq
GGCCTTGGCCATTCCTACAGGCT
3' ss Score
6.1
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
TGCATGGAGGAAAAGGAGATGTTCGAGCTGCAGTGCCTGGCCTTGCGCAAGGATGCCAAGATGTACAAGGACCGGATCGAGGCTATCCTGCAGCAGATGGAGGAAGTCTCCATTGAGCGGGACCAG
Seq A exon
GCTATGACCTCAAGGGAAGAGCTGCATGCACAGTGTGCCCAAAGCTTTCAGGACAAAGATAAGCTGCGAAAGCAGGTTCGAGAACTGGATGAGAAGGCCGACGAGTTGCAGCTGCAGCTGTTCCAGACCGAGAGCCGATTACTGGCCGCTGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
Seq C2 exon
AGCTCTGACTTGGAAGACAGTTCCCCCAGGAACTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.250 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGGAGGAAAAGGAGATGT
R:
CTGGGAGTTCCTGGGGGA
Band lengths:
165-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]