MmuEX6099701 @ mm10
Exon Skipping
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26354830-26356883:-
Coord C1 exon
chr2:26356758-26356883
Coord A exon
chr2:26355333-26355524
Coord C2 exon
chr2:26354830-26354871
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTGCTATTCCTACAGGCT
3' ss Score
9.37
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGCACGGAAGAAAAGGAGATGTTCGAGCTGCAGTGCCTGGCCTTGCGCAAGGATGCCAAGATGTACAAGGACCGTATCGAGGCTATCCTGCTGCAGATGGAGGAGGTCTCCATTGAGAGGGACCAG
Seq A exon
GCTATGGCCTCCAGGGAAGAGCTGCATGCACAGTGTACCCAAAGCTTTCAGGACAAAGATAAGCTTCGAAAGCTGGTTCGAGAGCTGGGTGAGAAGGCAGATGAGCTGCAGCTACAGCTGTTCCAGACGGAGAGCCGATTACTGGCCGCCGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
Seq C2 exon
AGCTCTGACTTGGAAGACAGTTCACCCAGGAACTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928-'12-22,'12-19,13-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.102 C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACGGAAGAAAAGGAGATGT
R:
CTGGGAGTTCCTGGGTGAACT
Band lengths:
165-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types