HsaEX6063997 @ hg19
Exon Skipping
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:16391]
Coordinates
chr9:139261668-139264327:-
Coord C1 exon
chr9:139264202-139264327
Coord A exon
chr9:139262089-139262280
Coord C2 exon
chr9:139261668-139261709
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTGCTGTCCCGTCAGGCC
3' ss Score
8.45
5' ss Seq
CTGGTGGGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
TGCATGGAGGAGAAGGAGATGTTCGAGCTGCAGTGCCTGGCACTACGTAAGGACTCCAAGATGTACAAGGACCGCATCGAGGCCATCCTGCTGCAGATGGAGGAGGTCGCCATTGAGCGGGACCAG
Seq A exon
GCCATAGCCACGCGGGAGGAGCTGCACGCACAGCACGCCCGGGGCCTGCAGGAGAAGGACGCGCTGCGCAAGCAGGTGCGGGAGCTGGGCGAGAAGGCGGATGAGCTGCAGCTGCAGGTGTTCCAGTGTGAGGCGCAGCTACTGGCCGTGGAGGGCAGGCTCAGGCGGCAGCAGCTGGAGACGCTCGTCCTG
Seq C2 exon
AGCTCCGACCTGGAAGATGGCTCACCCAGGAGGTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796-'6-10,'6-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.219 C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGGAGGAGAAGGAGATGT
R:
CTCCTGGGTGAGCCATCTTCC
Band lengths:
158-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)