DreEX6013248 @ danRer10
Exon Skipping
Gene
ENSDARG00000067672 | card9
Description
caspase recruitment domain family, member 9 [Source:ZFIN;Acc:ZDB-GENE-060531-94]
Coordinates
chr5:50511688-50513467:-
Coord C1 exon
chr5:50513342-50513467
Coord A exon
chr5:50512128-50512316
Coord C2 exon
chr5:50511688-50511723
Length
189 bp
Sequences
Splice sites
3' ss Seq
CAAATATGGCCTTTTCATAGGCT
3' ss Score
5.99
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TATCGAGAAGAGAAGGATGAGTTAGAACTTAAGTGCTTAATGCTAAAGAAGGACTCTAAGATGTATGGAGACCGAATGGAAGACATTCTGAAACAGCTGGAAGAGGTGATCAAAGAAAGAGACAAG
Seq A exon
GCTATTTGTACGAGAGAGGAGTACCATCTGGAAAACTCAAAAAATCTCCAAGACAAAGACCAGTACCGCAAGCAGATCCGGGAAATGGGAGAACGCTATGATGAACTTCAAGTCCAGTTGTTTCGAACTCAAGGAGAAGTTCTTGCTCTTCAAGCTACACTTCGCAAACAGAAGAGCCCCATTCGAGTG
Seq C2 exon
AACTCAGGAGAGAGTTCCTTGCTGAGTTCATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067672-'5-8,'5-7,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.413 C2=0.417
Domain overlap (PFAM):
C1:
PF115593=ADIP=PU(32.1=83.3)
A:
PF115593=ADIP=FE(56.9=100)
C2:
PF115593=ADIP=PD(8.3=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGAGAAGAGAAGGATGAGTTAGA
R:
CTCAAATGAACTCAGCAAGGAACTC
Band lengths:
162-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]