HsaEX6063997 @ hg38
Exon Skipping
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr9:136367216-136369875:-
Coord C1 exon
chr9:136369750-136369875
Coord A exon
chr9:136367637-136367828
Coord C2 exon
chr9:136367216-136367257
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTGCTGTCCCGTCAGGCC
3' ss Score
8.45
5' ss Seq
CTGGTGGGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
TGCATGGAGGAGAAGGAGATGTTCGAGCTGCAGTGCCTGGCACTACGTAAGGACTCCAAGATGTACAAGGACCGCATCGAGGCCATCCTGCTGCAGATGGAGGAGGTCGCCATTGAGCGGGACCAG
Seq A exon
GCCATAGCCACGCGGGAGGAGCTGCACGCACAGCACGCCCGGGGCCTGCAGGAGAAGGACGCGCTGCGCAAGCAGGTGCGGGAGCTGGGCGAGAAGGCGGATGAGCTGCAGCTGCAGGTGTTCCAGTGTGAGGCGCAGCTACTGGCCGTGGAGGGCAGGCTCAGGCGGCAGCAGCTGGAGACGCTCGTCCTG
Seq C2 exon
AGCTCCGACCTGGAAGATGGCTCACCCAGGAGGTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796-'9-11,'9-9,11-11
Average complexity
S
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.243 C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGGAGGAGAAGGAGATGT
R:
CTCCTGGGTGAGCCATCTTCC
Band lengths:
158-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains