GgaINT0125937 @ galGal3
Intron Retention
Gene
ENSGALG00000001889 | CARD9
Description
NA
Coordinates
chr17:8604123-8605169:+
Coord C1 exon
chr17:8604123-8604182
Coord A exon
chr17:8604183-8605078
Coord C2 exon
chr17:8605079-8605169
Length
896 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAA
5' ss Score
1.89
3' ss Seq
ATTCATCTCCTCGCCTTTATTTT
3' ss Score
-1.39
Exon sequences
Seq C1 exon
ATGGTGTCGCTGGTGATCCTATGGGGAATTCCATCACCCTAAGCAAGACTCAGAGGTCAA
Seq A exon
GTAAAATGAGCAGGGTCTTGTGCAATGATCACAAGATTGAATGCTGAATGTTTCAAGGCCTGGGTTCAGCTCCCTGTTGATGCTGTGTACTGGTGGGCAGCTCTCACATTACAGCTATTGCTGTTTGGTGAACTGGTGGAAGGACAAGTTTCTCACCATGGCAGCTGTGACTGAAACTGTGATTTGTTTTCTTTTCTCATAGAAGACTGCTGTAAAGGACAAACCCAGCAATTCAGCATGCAAGAAAGCAATCTGACTGCAGAGTCACCCACTGTAAGAGCCCACAGAGGTTCTCTTTAGCCTGGCTGGGGTTTGTAGTTTTTCATGTTCTTGTTAATGATGGATTTACCAGCAATGAGGGGCACGGAGGCAGCTGCTGCTCTTCCAGAAAGCTTTTTGTGCACAATGGACCCTCCAAAAGGGTGAACTCTGAACCGCAGAGCGCTCATCTGCTGCCTATTCCTCAGCCTAGAAACCTCTGCTTGCTTCTGGCCTTTTTCTCTGGACGTGGACGTTTTGCAGTGTGTTTGCAAGTACCGCTGCTGCTACAGGAAACAGAACTGCAGATTTGCAATTGGAAGGGAATAATAAGCATGGCAAAAGGGGGTGTGTTTGCCTGCTGGACGCAGCAGAGGACAGCCCAGGAAGGATCCTGCTGCACTGCAGGCCTCAGCAGATACAAATGCTGGCTCTACACCCTGCAGTACTGCCCAAGGGCCGGGCTGTGGTAGCAACCAGCTGCTCTTTGTCACTTTAAGGCACAGGTTTCCATTTTCTCCCCTTCATTTCAAAGCAAAAGTCTGTGAGGGGCTCATCAGCCTTAAAAGGGGGTCATCTTTACACAGCCGCTGTGCCCAAGCTGCTACAAACGCCCTCATTCATCTCCTCGCCTTTAT
Seq C2 exon
TTTTCCAGTTCGAGGAGTGCAGCTCAGCCCACGAGGAGCTGTCCGAGAAGGAGCGGAGGAGGATGAAGGACTGCTTTGAGCGTTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889:ENSGALT00000002925:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]