MmuINT0029132 @ mm10
Intron Retention
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26352485-26353014:-
Coord C1 exon
chr2:26352941-26353014
Coord A exon
chr2:26352562-26352940
Coord C2 exon
chr2:26352485-26352561
Length
379 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGG
5' ss Score
6.57
3' ss Seq
CGGCCCCGTTCCTTCTCTAGGGC
3' ss Score
11.95
Exon sequences
Seq C1 exon
GTGTACTGGCAGACAGGGAGAGCCCAGAGCAGCCCTTTATGGCTCTGAACAAGGAGCATCTTTCACTGACCCAT
Seq A exon
GTAAGGCTGATTGGGGTTCCCAAGAGCCCTGGTTACTACATGGCTGATCCTGGGGAGGAGGGTGACGCCACTGGACAGCTGGGGATCACAAGGTCTTTGGTAGTGTATGGGTAGGATGTAACATTTGGATAGTGGGGTGGTTGGACAGGGGAGGGGACAATGTAAGGACACCCATACTGCTGTTCACTGCAAAGAAGTCTTCCACTCACCTGGCTACAAAGGGGTTGTCACCCCACGCTCAGTCATCTCGGAGTCCAGCAGACCCCACGGCCAGCTAGCTATGCTCCACACCTGCTGGAGTCCCAGGGCTGCCGTGGTAAGGCCACGGTGTCCAGCTGCCCGCCCCGTTGTCCAGCTGCCGGCCCCGTTCCTTCTCTAG
Seq C2 exon
GGCATGGGGCCCAGCAGCAGCGAGCCCCCGGAGAAGGAGCGGCGGCGCCTCAAGGAGAGCTTCGAGAACTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928:ENSMUST00000028294:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types