RnoINT0029380 @ rn6
Intron Retention
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3798660-3799229:-
Coord C1 exon
chr3:3799156-3799229
Coord A exon
chr3:3798737-3799155
Coord C2 exon
chr3:3798660-3798736
Length
419 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGG
5' ss Score
6.57
3' ss Seq
TGGCACCGTTCCTTCTACAGGAC
3' ss Score
11.33
Exon sequences
Seq C1 exon
GTGTCCTGGCAGACAGGGAGAGCCCAGAGCAGCCCTTCGTGGTTCTGAACAAGAAGCATCTTTCGCAGACCCAT
Seq A exon
GTAAGGCTGACCGGGGTCCCCAAGAGCCCTGATGACTAAATGGCTCATCCTGGGGAGGAGGGTGACTCCACCTGCACAGCTGGGGATCACAAGGTCTTTGTAGTGCATGTGGTGTGTAACATGTGGGTAGTGTTTGGTGCATTAACTGGAGCCCCTCTTCTTGGACAGAACCCTAGATGTAGGGTGGTTGGACAGGGGAGGGAGGCAGTAATGTAAGGACATTCACTGCAAAGAAGTCTTCCACTCAGCCTGGCTGAAAAGGGGTGATTGCCCCATGTTCACTTATCTCGGAGTCCAGTAGACCCCAAGGCCAGCTAGCTTGGCTTCACACCTGCTGGAGTAACAGGGCTGCCGTGGTAAGGCCACGGTGTCCAGCTGCCCGCCCTGTTGTCCAGCTGCTGGCACCGTTCCTTCTACAG
Seq C2 exon
GACACGGTGCCCAGCAGCAGCGAGCCCCCGGAGAAGGAGCGGCGGCGCCTCAAGGAGAGCTTCGAGAACTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470:ENSRNOT00000091484:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]