GgaEX0027604 @ galGal3
Exon Skipping
Gene
ENSGALG00000001889 | CARD9
Description
NA
Coordinates
chr17:8600846-8605169:+
Coord C1 exon
chr17:8600846-8600995
Coord A exon
chr17:8604385-8604455
Coord C2 exon
chr17:8605087-8605169
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCTTTTCTCATAGAAG
3' ss Score
8.39
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
CAGGTTGCCAGGGAACAGAATTTGGAGACGAGTCTCTCCCATGAGACTGTGCAGAATGACTGCAGCCAGGTGCTGGAGCGCCAGGACCTGCTGAACACCCTGTACCACCTTCGCAAGGAGCTGCGCCAAGCCGAGGTGCTTCGAGACAAG
Seq A exon
AAGACTGCTGTAAAGGACAAACCCAGCAATTCAGCATGCAAGAAAGCAATCTGACTGCAGAGTCACCCACT
Seq C2 exon
TTCGAGGAGTGCAGCTCAGCCCACGAGGAGCTGTCCGAGAAGGAGCGGAGGAGGATGAAGGACTGCTTTGAGCGTTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCATGAGACTGTGCAGA
R:
AGCAGTCCTTCATCCTCCTCC
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event