BtaINT0032418 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008723 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
Coordinates
chr24:58888173-58892937:-
Coord C1 exon
chr24:58892817-58892937
Coord A exon
chr24:58888313-58892816
Coord C2 exon
chr24:58888173-58888312
Length
4504 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GAGATGCTCTTTGATTGCAGGCT
3' ss Score
5.56
Exon sequences
Seq C1 exon
GTTGCCCTGCTCCCCAACAGCGCTGCCGACCTGGGCAAGTACATCACTGGTCACAAGGCACTGGCCTCAAACGCCTACCTTCCAGGTCCTCCTGGCCTGCCTGGGGGCCAGGGCCCCCCTG
Seq A exon
GTGAGTATGAACGTGAATGTGAGCGTCAGGCAGCCACGTCCGACTCTTTGCAAGTCCATGGATAGTCCATGGGATTCTCCAGGCAAGAATACGGGAGTGGGGAGCCTTTCCCTTCTCCAGAAGGTCTTCCCAACCCAGGAATCGAAGCCAGGTCTCCCGCATCGCAGGCGGATTCTTTACCAGCTGAGCAGTGAAGAGGAGCATGAAAGGGCTGTAGGTTTACCAGCCAGAGCCTGCCAGGAGCTCACCTTTAGTGGGATGGGACGGAGTTCTTTAGCTTCCATGGGTGGGAGCAGAAGCCAGGGTCCAGGGAACCCCACGCCAGTGTGCAAGAAATGGACAAACAAATGACCAACAGTCATCAGGGGAAAAGTCATCGTCCTGGACTGGCCCGGGGTCGTAACGGTCATTGTTAGGTTACAGGGAAACAAATGAAAACTCTTTAACACTAGCATGTGTGAACGTCGGATGGTGTGCTGAACCCCTCTGGGCTCATCAGCTGCTCTCACGATTCATGGCCAGCCTCGTCCCACTGTTTTCCAGTCCTCTCTCCTCCTCCTCCTATTATTGGTCAACACACTTACATTGATATTTATTTTTATACCTGTCTCTACATTTCAGTTCATTAAGTCACCCTCACTGAGATACAATTGTATACAATAAAATGTACACACTCAAGTTACAGTTGGACGAGTTTTCACATATGCCTGCACTCTATGCGTGCTCAGTCACTTCAGTCGTGTCCGACTCTGCAATCCTTTGAACTGTAGCTGTCCAGACTCCTCGGTCCATGGATTCTCCAGGCAAGAACACTGGAGTGCATTGCCATGCCCTCCTCCAGGGGATCTTCCCGACCCAGGGATCGACTCCGCGTCTCCTGTGTCATCTTTGTCTCAGGCTGCTTCTTTACTGCTGAGCCAGTGGGGAAGCCCTGCGTGCACCCTGTATCAAGCCCTTACTAAGCACCACCTTATATCTGGTCTACATCCAGATATAGAAACTCTCCATCACCCCCAGAAAGTGCCCTTGTGCCCCTGGCAGTCTACATCCTCAGCTCCAGGTAACCACCAACCTGCTTTCTGTTGCTGCAGTTTTGTCTATTCTAGAACTTCACGAAAAGGAATCTATTATTTTGTCTGGCTCCTTCAGCATACCGTTTTGGAGATTCCCCCCTGCACTCTGAACAAAATCCCAAACATCCTGTCTTTACATCGGGAAATATGCAACAAGAACTCAAAACAGTGACGGGACGTTTTCTCTTTTATTATGAGTCTCTCCACAGATAGATCAGTATTTTTTTTTTCCATACTAGTGAAGGAAATATTATTAGGGTTAGCAAATGTTGTGAGACCTGGACATCTTATCCCCACTGCTCATCGTCTAGCAGTGAGCTGGGTGTTGTGACTCCTGACATTTTAATGGGGACAGCAAAGCACTCGGAATGAAAGCAAGTGGAGTGAGACAGTACCTGTCTCCCCCAACTAAAGAATTCAGGTGCTCCCAGCTGTGGAAGCTTAAAGAAGGGAGAGATCAGTGTAGCCTGCGGTGACCAGGGGACTTGGGGCTCAAGCTGGACATGGACAGACATGAAAGGTAGGACCAGTCCAAGCTACAAGGACATCGGCAGGTTTTACGATGGAAGGTCAGCAACAACAAAGGCTCAAAACGCTTTCTAAACTATGTGTTTTCTTCTCCACTAACATCTTCATCTCCCGGTTTCCATCAAAACCCAGATTCCTGGGTCTCAGTCTGTAGAGAGACCAAGACCAAAAGCTGGTCCAAGACTTTGGTTTCTCCCCTCGTTCATTCCCTTGACTTCTTTTCTCCAGCAGACACCACACACAGGCAGCCTCTCGCTGCTTCTGAGTAAGCTTGGGTCCCTTCTTATGCATTGATTCTTAGCACAGTGTTCTCCATCCTTCTCTAAGAAAATGTTCTTGCTCTGCTTCCCTGGAGAAAATTCATCCTCAGGCCAGTCTGCATATCACTCCAATAAGGACATTCGAGGAACAGGGGAGCCATTGGCCTCTTTCTGAATGAATGACCTGCAGGCTTTCCATGCCAGTCTCGCCATCTGGTTTCCAGCGTAGTGTGAGCTGCCCAGGGGCCTTGCTGGGGCAAAGTCACCAAGGACGAGCTCCGGCAGTGCCCTTGCTTTCTCCTCCAGTCCTGTTTCCTGCCCCCCTCCTGGCTTCTAGCATCGTGGTGTGTGATGCTCTCCACCGAGGTGTGTTAGGGCAGCTAGAGGGAGATACTGGATTCTCTTCCCCTTAACTCCCATTCCAGTCCTGAAGGCTGGTGAGTCACAGCCTGGGGCAGCAAGCCAGGAGCTCTGCTAGGTAGGAGTCCTTTGGCTGCTCTCTGCCCCTCACTGTCAGATGGAAGGTGCTGACATTTGCTCATCAAAGCCCCGCAGTTTAAAGGCACTTGACACGCGATCTCTAAAGCTCGTTGCCTAAATGAAGGTAAGATATGATCTCCGGCCTGTCCTTATGTTTTAGAGGTAAAGTATTTTGTTATGAGAGGGAGCTGGTCCCCTTCCCAGGTAAATGCTTTCAAGGATGTACCTGGAACCAGCATTTAGAGGAGGGGGAGTGACACATACTTGGATGGAATAATTAAGCCTTTAATGTTGGCTTAACTATTTTGTGAGCTAGAAAAGACTTCCCCAAATATGATAAGTCTGAAGTCTTTGGGGGTTTTTTTGTTTTGTTTTCCAGTGCCTGAAAGTCATTCCGTTCTATCACTGTGTTCTGCCAATTGTAGGAGCCATGTACCACCAAAAAGGAACTCCTGTGTGTGTTTGAAAGAGAGGAATCTGTATAGCATTAAGGAATACATCGCTGAGAAATAGGGACAGCACAGCAATCAGCCCAGCCTCTTCGTTAAAGTCATTTGACATGAAACATCTACTGAACAGCCTTTCCTGTACCTGGGCTTCTCTGAGAGCGTGCTCACAATTAAAATACAACCATGCCCACATAAAGTTGACGGTCTAAAAAGGGTTAGAACACAGCATCCTTCCCTTTGCTAAGGAATGAAGTTGAACCCTTGCTTTCTACCACATACAAAGTGGATTAAAAACCTAAATGTAAGACCTGAGACTGTAAAACTCCTAGGAGAAAACATAGGTGAGAACTTTCACGACATCGGCAATGATTTCGTGCTTATGATACCAGGAGCACAGACGACAAAAGTGAAACTAGAGCTGAAACTCTCTCGTCTGTTCGGGCAAACTGCCTTCCTCTAGCATCTTTAGCATGTGTTGTTATCGTTAAGTCCCTGTATGATAACCCTAACATCTGGTTGCCTCTGAGTCTGTTTCTGTTGATTGCTGAATTTCTTGAATGGGAGTTGTTTAATTTTGAGGAGAGTAGTTTTGTCTGGGTGTTGGTTTGAGTTTTTTATAATGTGCCTTAAAATTTTGATTTGAATGCCAGATACTGTTTGCAGAGGAACAGTGGAGACTGGGTACATAGTAACTGCTCCCAGGGACGGGTACACAGGCTGCTCGCCAGAAGAACCGGGTCAGTTTAATGAGTAACTGAGCCAGGTTTGGGTGTGTTGGCACTGACTCTACCTCTCGTGTTCCATGGTCTCCAAGTTTTCAGATTACTTTGATGGGAGGATTCTGTTACTTTGGTGGGGGGCGGGGGGCGGGCCGCGAGCAGTGGGTATATATTTGTTTTACGGGCTTCCCTGGTGGCTCAGACGGTGAAGAATCTGCCTGCAATGCTGGAGACGCAGGTTCAATCCCTGGGGTGGGAAGATCCCCTGGAGAAAGAAATGGCAACCCACTCCAGTATTCTCGCCTGGGAAGTCCCATGGACTAAGGAGCCTTGCTGGCTACTCAAGATTTGGACACGACTTAGCGACTAAACAACAGCCAAACTGCTCTGTAAGGCAGATTCTTATTAGCCCTGCTTTACGGATGAGGAACGAAGGTTCACAGAGGTCAGGAAGCTTGTCCACGATTCAGAGGCAGGTCCCCCTGCTGTTGAAACCTGTACCCCAGCTGCTCCCCAGCTCCATTGACCACTGCCCTGCAGTGATGGGGGATGGTGAGAGCAGATGGTCTCAAGACTGGTGAAATTAAAGAGCTTAAAGGAGGTGAAAGATGTGGAAGAGGTGAAATGGTCACTGATTGGATGAGGAGCTTATGGAAATAGAGGTATTTATAGGAAGACTCCCAAGTTTCTGGCTTGAATGAGTGGGGATGGGAGTTCCATGAAAGGAGTGTGAAGTCTGAATCAATTCGCTGAACGCCTGAGACTAACACATTGTCAGTCAACAGTATTTCAATACAAGAAATGTTTTAGAATGGGGACGGACAGCAATTTTTGGTCATGATCAAAATGCCTATGGGACATGTCAGTGGAGAGGTCAGAAGGCAAAGGTCAGAGTGCAAAGAGAAACAGCTGCAAGGGGCGCCTGGACTGTCAGCCAGCCAGAGTCCTCGTCCTCCTCCTGGGCTGTGGACTAACGAGATGCTCTTTGATTGCAG
Seq C2 exon
GCTCACCAGGACCAAAGGGGAGCCCCGGCTTCCCAGGGATCCCAGGCCCCCCAGGGCAGCCTGGCCCGCGGGGCTCGATGGGACCCGTGGGACCATCTCCCGACCTGTCCCACATTAAGCAAGGCCGGAGGGGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008723:ENSBTAT00000011491:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(31.4=39.0)
A:
NA
C2:
PF0139113=Collagen=PD(66.7=72.3),PF0139113=Collagen=PU(20.5=17.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]