BtaEX0007290 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008723 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
Coordinates
chr24:58888057-58892937:-
Coord C1 exon
chr24:58892817-58892937
Coord A exon
chr24:58888173-58888312
Coord C2 exon
chr24:58888057-58888092
Length
140 bp
Sequences
Splice sites
3' ss Seq
GAGATGCTCTTTGATTGCAGGCT
3' ss Score
5.56
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GTTGCCCTGCTCCCCAACAGCGCTGCCGACCTGGGCAAGTACATCACTGGTCACAAGGCACTGGCCTCAAACGCCTACCTTCCAGGTCCTCCTGGCCTGCCTGGGGGCCAGGGCCCCCCTG
Seq A exon
GCTCACCAGGACCAAAGGGGAGCCCCGGCTTCCCAGGGATCCCAGGCCCCCCAGGGCAGCCTGGCCCGCGGGGCTCGATGGGACCCGTGGGACCATCTCCCGACCTGTCCCACATTAAGCAAGGCCGGAGGGGCCCTGTG
Seq C2 exon
GGTCCGCCAGGCGCCCCAGGAAGAGATGGCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008723_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(31.4=39.0)
A:
PF0139113=Collagen=PD(66.7=72.3),PF0139113=Collagen=PU(20.5=17.0)
C2:
PF0139113=Collagen=FE(28.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCTGCTCCCCAAC
R:
GAGCCATCTCTTCCTGGGGC
Band lengths:
153-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development