GgaEX1013181 @ galGal3
Exon Skipping
Gene
ENSGALG00000002613 | CCBE1
Description
NA
Coordinates
chrZ:8646625-8649041:-
Coord C1 exon
chrZ:8648921-8649041
Coord A exon
chrZ:8646753-8646892
Coord C2 exon
chrZ:8646625-8646660
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATAACCTTTGTCAATTGCAGGGG
3' ss Score
9.74
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GTTTCTTTGCTACCAAATAATGCTGCTGATCTTAGCAAGCAAATCACTGGTGAAAAAGTGCTTGCATCTAATGCATATATCCCCGGCCCCCCAGGACAGCCTGGCCAACAAGGTCCTCCAG
Seq A exon
GGGCACCAGGACCGAAAGGAAGTCAAGGAGTTCCTGGGTCACCTGGACCTCCTGGACAGCCAGGCCCCCGGGGATCAATGGGACCTATGGGCCCATCTCCAGATATATCCCACATTAAACAGGGCAGACGAGGCCCCGTG
Seq C2 exon
GGCCCACCTGGAGCACCGGGGAGAGATGGTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002613-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
86%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(28.6=34.1)
A:
PF0139113=Collagen=PD(69.4=72.3),PF0139113=Collagen=PU(20.5=17.0)
C2:
PF0139113=Collagen=FE(28.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCTACCAAATAATGCTGCTG
R:
CTTACTACCATCTCTCCCCGGT
Band lengths:
154-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]