RnoEX6059106 @ rn6
Exon Skipping
Gene
ENSRNOG00000024536 | AABR07032338.1
Description
NA
Coordinates
chr18:61762097-61765162:-
Coord C1 exon
chr18:61765042-61765162
Coord A exon
chr18:61762220-61762359
Coord C2 exon
chr18:61762097-61762132
Length
140 bp
Sequences
Splice sites
3' ss Seq
TAAGATGTTTCTGATTACAGGCT
3' ss Score
4.64
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
ATTTCTCTGCTCCCCAACAATGCCGCCGAACTGGGCAAGTATGTCAATGGTGACAAGGTGCTGGCCTCGAACACCTATCTTCCAGGACCTCCTGGCCTGCCTGGGGGACAGGGCCCACCTG
Seq A exon
GCTCACCAGGACCCAAGGGGAGCCCTGGATTCCCCGGTATGCCAGGCCCTCCTGGACAACCAGGCCCACGGGGCTCAATGGGACCTATGGGACCATCCCCTGACCTGTCTCATATTAAGCAAGGCCGGAGGGGCCCTGTG
Seq C2 exon
GGTCCACCAGGAGCACCAGGAAGACATGGCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024536-'6-5,'6-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(28.6=34.1)
A:
PF0139113=Collagen=PD(69.4=72.3),PF0139113=Collagen=PU(20.5=17.0)
C2:
PF0139113=Collagen=FE(28.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTGCTCCCCAACAATGC
R:
TTCAAGCCATGTCTTCCTGGTG
Band lengths:
154-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]