DreEX6083265 @ danRer10
Exon Skipping
Gene
ENSDARG00000086158 | ccbe1
Description
collagen and calcium binding EGF domains 1 [Source:ZFIN;Acc:ZDB-GENE-090506-7]
Coordinates
chr21:10556025-10573460:+
Coord C1 exon
chr21:10556025-10556136
Coord A exon
chr21:10557089-10557228
Coord C2 exon
chr21:10573425-10573460
Length
140 bp
Sequences
Splice sites
3' ss Seq
CACTTTATATTGTCTCTCAGGGA
3' ss Score
9.34
5' ss Seq
GTGGTGCGT
5' ss Score
6.46
Exon sequences
Seq C1 exon
ATGTCCTTATTGTCGAGCAACACCGAGATCAATAAGCAGATGACCAATGAAAAAATGATGATGACGACAAATTCATTTTTACCTGGACCTCCAGGGCCTCCTGGGCCTGCAG
Seq A exon
GGACGCCTGGAGCCAAAGGATCCTCTGGCTCTCCTGGACAGATGGGGCCACCAGGCTTACCTGGTCCCAGAGGTGACATGGGACCCATTGGACCCTCCCCTGACCTGTCGCATATCAAACAGGGTCGACGTGGCCCAGTG
Seq C2 exon
GGTCCTCCTGGGGCTCCAGGGAGAGATGGCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086158-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(23.9=28.9)
A:
PF0139113=Collagen=PD(73.9=72.3),PF0139113=Collagen=PU(20.5=17.0)
C2:
PF0139113=Collagen=FE(28.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTTATTGTCGAGCAACACC
R:
TTCATGCCATCTCTCCCTGGA
Band lengths:
146-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]