MmuEX6002171 @ mm9
Exon Skipping
Gene
ENSMUSG00000046318 | Ccbe1
Description
collagen and calcium binding EGF domains 1 [Source:MGI Symbol;Acc:MGI:2445053]
Coordinates
chr18:66226237-66230975:-
Coord C1 exon
chr18:66230855-66230975
Coord A exon
chr18:66226383-66226522
Coord C2 exon
chr18:66226237-66226272
Length
140 bp
Sequences
Splice sites
3' ss Seq
TAAGATGTTCTTAATTACAGGCT
3' ss Score
5.75
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
ATGGCGCTGCTCCCCAACAATGCCGCTGAACTGGGCAAGTATGTCAATGGTGACAAGGTACTGGCCTCAAACGCCTACCTTCCAGGACCTCCTGGCCTGCCTGGGGGACAGGGCCCACCAG
Seq A exon
GCTCACCAGGACCCAAGGGGAGCCCTGGATTCCCCGGTATGCCAGGCCCTCCTGGACAGCCAGGCCCACGGGGCTCAATGGGACCTATGGGACCTTCCCCTGACCTGTCTCATATTAAGCAAGGCCGGAGGGGCCCCGTG
Seq C2 exon
GGCCCACCAGGAGCACCAGGAAGACACGGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046318-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(30.0=36.6)
A:
PF0139113=Collagen=PD(68.0=72.3),PF0139113=Collagen=PU(20.5=17.0)
C2:
PF0139113=Collagen=FE(28.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGCTCCCCAACAAT
R:
CTTGGAGCCGTGTCTTCCTG
Band lengths:
154-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: