BtaINT0032426 @ bosTau6
Intron Retention
Gene
ENSBTAG00000036101 | CCBL1
Description
Bos taurus cysteine conjugate-beta lyase, cytoplasmic (CCBL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001077978]
Coordinates
chr11:99342235-99342529:-
Coord C1 exon
chr11:99342453-99342529
Coord A exon
chr11:99342325-99342452
Coord C2 exon
chr11:99342235-99342324
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCCCTGTGTTCTTGGTCCAGGTG
3' ss Score
10.01
Exon sequences
Seq C1 exon
CCAGCCTCCCTGGCATGTGGGAACGCACCCTGACTATCGGTAGCGCTGGCAAGACCTTCAGTGTCACAGGCTGGAAG
Seq A exon
GTGAGGCAACGAGAGTATGGGGGGCCCCTCCCTCTACAATCGTTGGTGGGAGAGGCTGGCCTGGGAATCCGGAAAGGGTTTGGCTGGGCCCCCAAGGGCCTCACCCTCTCCCTGTGTTCTTGGTCCAG
Seq C2 exon
GTGGGCTGGGTCCTGGGCCCGGACAGCCTCATGAAGCACCTGCGTACTGTGCACCAGAACTCCATCTATCACTGTGCCACGCAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000036101:ENSBTAT00000025004:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.2=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(11.1=100),PF0015516=Aminotran_1_2=PU(0.9=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGCATGTGGGAACG
R:
CTGCGTGGCACAGTGATAGAT
Band lengths:
154-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development