GgaINT1008473 @ galGal4
Intron Retention
Gene
ENSGALG00000004604 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr17:5286422-5286807:-
Coord C1 exon
chr17:5286731-5286807
Coord A exon
chr17:5286512-5286730
Coord C2 exon
chr17:5286422-5286511
Length
219 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCCTCCTCTTCTGGCCATAGGTG
3' ss Score
10.39
Exon sequences
Seq C1 exon
CCAGTTTGCCAGGGATGTGGGACCGCACAGTGATCATTGGGAGTGCTGGAAAAACCTTCAGTGTCACTGGCTGGAAG
Seq A exon
GTAAGTTCCCCATGCAACACCTCATTGCCTCCCCATCCCTGTCCCTTTGCTCTAGGTCACGTTGGGCACAGCACTGAGGGCAATTGCACACTTAACTTTGAGCCTCAATGCCTCAAAATACCAACACTACTTTACCACAGCCCTGTCTGGAGAGTGTTACCAAACCTTGAGGAGGCACCTAATCTTACCACCTTCCTCCTCCTCCTCTTCTGGCCATAG
Seq C2 exon
GTGGGTTGGACTGTGGGACCCAACCGGCTGCTGCAGCACCTGCGTACCGTGCACCAGAACTCGGTGTACCACTGTGCTACAGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604:ENSGALT00000007326:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.4=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCCAGGGATGTGGGAC
R:
CTGTGCAGCTGTAGCACA
Band lengths:
164-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]