BtaINT0032437 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55126884-55128119:+
Coord C1 exon
chr3:55126884-55126970
Coord A exon
chr3:55126971-55127993
Coord C2 exon
chr3:55127994-55128119
Length
1023 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
TCTTCATTCTTCATGCTTAGAAA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTCATAGTGATAGTGCCTTTCTTTGACTGCTATGAGTCCATGGTGAGAATGGCTGGAGCAACACCTGTTTTTGTTCCCCTGAGATGT
Seq A exon
GTAAGTCTGCCCCTATGATTTACGTTTTTTAAAAAGTTTTGAAAATGCCTATTACTTTGTTGTCAATAAAGTTTCTACTTTGATTACATTTTGGGATTTACTGTATATCTCTACCATGACTGAAGGTAACAGCTATTTAAGGGGGGATTTTTATTACTTCATCATATGTTTGCCATGTATCTAACAGCTTCTACCTTGTATGTAATAGTATTTTTTGTGGTTATGTATCTCCCCTACTGACTGAGCACCACCAGGTCAGAGACCATTTCTGACTCACTTTTATAGCTCTAGTCCCCAGTAACTAACAGTGCAGGGTATGTGCTGGTAATCATTAAGTCATGGCTGACTCTGTGACCCCACAGATGGTAGCCCTCCAGGCTCCTCTCCATGGGATTTTTCAGGCAAGAATAGTGGAGTGGGTTGCCATTTCCTCCTCCAGGGGATTTTCCTGACTCAGGGATTGAATTCGGGTTTGCTGCTTGGCAGGCTGATTCTTTACCATTGAACCCCCTGGGAATCCTAGGGTGTGTGCTGGGTATTCAATAAATACTTACTCAATTCTGAATGAAGTGTTTTGGTTTTTTTACTCTACTTTTATCTTTAGCAATACAGTATAGTTTAAAAAATCTTTTTAAAAAATCTTATTAAAATAAGTAACACACTAGGGTGAATCACAGAATCTTCTATTAGCCTTATAGAATCAGACATGTTAACCATAATCAGACGTGTTAACCGTAACCATATAGCTGGCTCCTCTGAAGGAATTTAGGCACTTTTACAGCTGTTAATGTTGACAGAGTTCATGTTTCCATTTAACAGGTATGAGCATGGGACTCAAGTCCTGTTGGGCTCTTAAGGCAGAAGTAAATCTTAGTTATTTTTGTTTCTTTTCTTTGTTAGTTATCTATTAAGTTACCTTTGCCATGCCTTTCTCTACTTTTTTTTTCCTTATTAGGTTATTTATTTATAATACAGCAAACATGAATTAACTGATTAAATCACATCTTCATTCTTCATGCTTAG
Seq C2 exon
AAACCTGTTGATGGGAAAAAATGCTCTAGTTCTGACTGGACCTTAGATCCTCAAGAACTGGCAAGCAAATTTAATTCCAAAACCAAAGCTATAATACTAAATACTCCACATAACCCCCTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505:ENSBTAT00000000643:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.3=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAGTGCCTTTCTTTGACTGCT
R:
CTTGCCAAGGGGGTTATGTGG
Band lengths:
206-1229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]