GgaINT0038341 @ galGal4
Intron Retention
Gene
ENSGALG00000006188 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr8:14083573-14084947:+
Coord C1 exon
chr8:14083573-14083659
Coord A exon
chr8:14083660-14084824
Coord C2 exon
chr8:14084825-14084947
Length
1165 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TTTGTTTTTATTTTTCCAAGAAA
3' ss Score
4.75
Exon sequences
Seq C1 exon
GTAATAATAATAGAGCCATTTTATGACTGTTATGAACCAATGGTAAAGATGGCGGGTGCAAAGCCTGTTTTTATTCCACTGAGATAT
Seq A exon
GTGAGTAGCTTTCTAAAAATTGTTTTTTATATGAAACTTCTATATCTAATACAGTTTGAAAGCCTTATAGGAGATGCTTTTCTGTACAGTGTTTCATTATATCCAATTATACAAAAATGAGATTGATTGTTATAGAGTAAATCTGGGATGATGATAATCCAAAGCAAATCGGATGTTTTACTGGTGCTGGAAAAGGTAGGACAGTGTTTCTCATTTTCTCATTTACTTTAATTTGTGCAGTCTGAAAGCTGACCAACATTCCTTTATTTGGATGTGATCAGAAAATGTTTTCAGTGGAAGTGTGGGAAGGATGATCATGCCAGTGCAAATTCTGTATCTGTTGCATTTCAGAATATTTGGTTTCTGATCCCTTCAGTGACTCACAGAGTGATAGAGTAGAATTTATTTTCTAAAATCCACTTATTATTTAATAAGTGATTATGTGGTAGATGATATATTTATTGGTAAAAAGGAGTTACCATATGGTTAACTTACATATTGGTACTTCTGGCATCGTGTTGACAGGTTGCAAGAATTTTTATGGATGCAAGATGTTGGTCCTGCTACCAAGAGAGGGCTGAGGGACTGCTTTTCTTTCCTGCTAGGCATATATCGGAAAATTAGTATGGCCATGCTCTTTGATCTTAGCAGAAACTGACCCAAACTTCTGTCATCTTCATGTACACTGAGGATGTAACTCCAGAGCCTCAGTGGTAGATGTTTTTAACTCTTTGGCTGTTTTCATGTAGATAAGGAGGGAAGGAGCTAAAATCCTAGTCTAGTGGTGATTTATCTTTCCAGCCAGGCATGCACATAACTTGTTCTAATGTATGGGAAGGCTATAAACTCTACTGTCATATGATTGGACTTCCTGCATTACACACTATTGGTCAGTGTGTGTGTAACCAGATTCTGGAAACTGGTTCCTGGGGAAGCTGTGAGACAGGCATCAGGCAGGACAAGACTGCCACTGTCACAGTAATTTATCTTGATATTAGCCTCCTGTCTGTTTGGGAAGCACCTCCTCCCAGGGAAGCAGAACAGGTTGGAGAAGTTGTCATGTGCAGTTAGTAAAGTGTCTGAGGATGGTAACTTGGGCACCTCTGTTTAGGCAGTAGCAAGTGTTGCATTCCAGTAATGCATGTTTTGTTTTTATTTTTCCAAG
Seq C2 exon
AAAAATGGTGGGAACTCTGCATCTAGTGCTGATTGGATCTTAGATCCAGCTGAACTTGCAAGTAAATTTAATTCCAAAACAAAAGCGATTATTCTGAATACCCCACACAACCCTATCGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188:ENSGALT00000009984:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(13.9=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATTTTATGACTGTTATGAACCA
R:
CGATAGGGTTGTGTGGGGTAT
Band lengths:
192-1357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]