BtaINT0032779 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44169343-44170505:-
Coord C1 exon
chr4:44170410-44170505
Coord A exon
chr4:44169514-44170409
Coord C2 exon
chr4:44169343-44169513
Length
896 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
3' ss Seq
TATTTGTGTTTTTCCAAAAGAAA
3' ss Score
4.64
Exon sequences
Seq C1 exon
ATTGAAGCTATTCCTAAAGATGATTCTACATTATCTGAGAGAAGGCGAGAACTCCATAAGGAAGTTGAAGTAGCTAAGAGGAATTTAACCCAGCAG
Seq A exon
GTTAATATCAAGTTTCACTTAAGTTTCTAAGAATGACTAATGCAAAGCTGTGTTTTTAACTGTGTTCCATGAAACCTCGTTAGTAGAAGAGTCAAAGAAAGTATGATCCTACCTAATATGAGTCTGTTTCTTTATCTCAAAGTGTACTCAAACCCACATTAAAATTTTGAAAGAGGAAAAAAAAATATGTTTGAGCTGTCAAAAAAATTATACAAATTCATGAGTTTAAAGTAAAAAGCCTGATTCAAAATACATAATAAATGCATTATTTCACCAATATCCAATTTCAAATTTTGTTTATCCAAAACCACTGTCAAAGTAAAACATGCTTTTATTTCTCTGCGAAGCTTTACTTGAAAATACAGTCTGAATAAGAAAAAGTTCTATGCTATCATGTTTGCACATTCTTTTTATAAGATAAATACCTGGTGCTAAGGCAGCAGAGTTACTTTTTGTGTTTTAATAAAATAAACTCTACATAGAAGACTTTAAAAGTAGTCTGAGATACTGGCCTTAATTCAGTTCAGTCACTCAGTGTCTGACTCTTTGCAACCCCGTGAGCCTCAGCATGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTCCACCCAAACCCACGTCCATTGAGTCAGTGATACCATCCAGCCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCCTCGATCTTTCCCAGCATCAGGGTCTTTTCAAATAAGTCAGTTCTTCCCACTATGTGGCCAAAGTATTGGAGTTTCAGCTTCAACATTGGTCCTTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGCCTTAGTGTGTTCCTTCAAATAAATACTTTATAATATTTGTGTTTTTCCAAAAG
Seq C2 exon
AAAATCCTATCAGAAGCTGAGTCTAAGTTAGTAGAACAGCAACTTGCTGAGGAAAACAAGCTTTTAAAGGAGCAAGAAAACATTCAAGAACTGCTTTTCAACCTTGTCCGTATGACTCAAATCAAAATTGATGAGAAGGAGCAAAAATCCAAGGATTTCCTGAAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341:ENSBTAT00000047247:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTACATTATCTGAGAGAAGGCG
R:
CTGAGCTTTCAGGAAATCCTTGGA
Band lengths:
246-1142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]