RnoINT0030479 @ rn6
Intron Retention
Gene
ENSRNOG00000012932 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr4:10391291-10392362:+
Coord C1 exon
chr4:10391291-10391386
Coord A exon
chr4:10391387-10392191
Coord C2 exon
chr4:10392192-10392362
Length
805 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
3' ss Seq
CACCCTGTGCTTTTCAAAAGAGA
3' ss Score
4.67
Exon sequences
Seq C1 exon
ATGGAAGCTATCCCCAAAGAAGACCTTTTATTGCCTGAGCAAAGGAAGGAGCTCCACAAAGAGGTTGACCTGGCTAAGAGAAATCTGGCTCAGCAG
Seq A exon
GTTAATATCAGTCACATGTTTATCTCAGAATGGAGAATAAAATGGTGTCTCAAAAGTGCTCCCTAAAACCACGTCAGAAAGAGAATGCTAAGGGACAGGAAGTGGCAGGGAGGGCGGGAGAAACTGGGGAGGCAGAAAGTATCAAATGATGATTGACGTACGTGTATACGGGAATGCCACAGTGGAACCCATTCATATTTATAATGATATAAACAGATAATACAATATGCATTAATATTTAGAGTAAAAGTATGATGTTACAGCCCTGCTTCCAATGGCCGATTTTTCCACTGGGGAGGTTTACTGAGGGTTGAGTGCAATGTCCAAGCCCGCTAGCCAAGTGTCGTATATCCGTGAGTATACACACACCACCCTCACCTTCAAGCTCATTCCCACACTGTTTTGTTCGTTTGTTTGTTTCTGAGAAGAAGGGAGGATGTGTTTGAAAGGACAAAACTTTCCCGGGCTATGTTTCTAAAAAAAAAAAAAAAAAAAAAAAAGGCTGTTGGTTGCATAAAAGTCAACCTTGTTTCCCCAATGTCTGATTTTAAATTCCAAACTTTTGTCAGCCAAACTACTGTGGAAGTGTTTTAAAACATATTTTTAAACTCCTCCTAGTCATTTAAAAACACAGTAAGGAACAGGGTTGATGGCACTACCCCACTAGTTTCCACCCTTCATAAAACAAAGGGAAACAAACTTGGGGCTTGGCCTCTTAATAAACTCAAAAGGAAGAGGCTGGGCTCCGTGCAGACCTTTCTGGGCTCCCTCAGAAAGCGAATTCTCACCCTGTGCTTTTCAAAAG
Seq C2 exon
AGATCTCTGTCAGAAGCCGAGGCCAAGTTAGTCGAGCAGCAGATTGCGGAGGAAAACAAGCTTTTAAAGGAGCAAGAAACTATGCGTGAGGTGCTGTTCAACCTCGGGCGAATGACTCAGATCAAAATGGAAGAGAAAGAACAAAAGGCTAAGGACTTCCTGAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012932:ENSRNOT00000017374:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTATCCCCAAAGAAGACC
R:
GGGATTTCAGGAAGTCCTTAGCC
Band lengths:
263-1068
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]