GgaINT0109137 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12550363-12552140:-
Coord C1 exon
chr1:12552045-12552140
Coord A exon
chr1:12550534-12552044
Coord C2 exon
chr1:12550363-12550533
Length
1511 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CTGAATTTGGTTTCCTTCAGGAG
3' ss Score
8.53
Exon sequences
Seq C1 exon
GCAGAAGCCATCCCTAAAATTAATGGAGTATTACTAGAAAGAAGACGAGAACTGCAGAAGGAAATAGAAATGAAAAAGAGATGTTTAGCTGAACAG
Seq A exon
GTGATGAGTTCTTCATTCTCATATTAATTCCCTGTAATGGTTTTCTGTCATGAGAATAAAGGAACCAAAGAAAAAATGGTGATAGTTTCTAGCTGATCTTCATGGAAGGGACCTTAAAGATCTTCTAGCTACAATTCCCTGCCATAGGCGCAGACACCTTCCACTAGATCTGTGGATGTCTGTCGGTATTCACCATGGTCAAATATGCTGAGGAAATGCAGATGTCTCATTCACAAGAGTATTACTAATTGCCACTATACAGATGACTTTATAATAAGCAGTAAATTTCAGACATACTTTCTTCCTATGTTCATATTCTCTTATCATATTCTCATATACATTTTCTTTTGTGCTGCCCTTGAATTCATTAGCATTGTCATAGAATGAATCATAGAATGGCCTGGGTTGAAAAGGACCACAATGATCATCGAGTTTCAATCCCCCTGCTATGTGCAGGGTCACCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCCAGTGCGTCACCACCCTCTGTGTGAAAAACTTCCTCCTAATATCTAACTTAAACCTCCCTTGAAGGGGAGGATATTTCCTTCAACTTTTTTTCTTCTCAGTAAGTTGTGAAAGGTGTCAGGTGAGATTCAGCTTGTGTTTGAATATGCATAGCTACATACATGTCACTATTTGTGTATGTGATATGTACTTAATGTTCCGCCATAGTTGGTGGAGCTTAGAAATCCATCCATTCACCTCATCCTGAAATAAGCTGATTTGAAGATTACATAAGGAACCCTTCTGAGTATTTGAACTGACCACCACTACAACACAGATCACAGAAGTTCCCTGAATAAACCCTCCTTCGAACTACAGCAAAGACGTAGGGAAAGCCCAAATCTTGATTTCAAAATTACCACTGGGAGAGAAAGGGCCAGATCCTGCTAAATTGTGTCAAGGGTTAATCCATGTTAAAAATGTGTGGCTGTAATCATCAGAGTTTGATTAGCTATAGCATTCAGTCACTATTTTTTAAGTGTTTGACCTTTGATTTGAGGAGTTTGTTATCAAACTTCTGTTCACTGTATGGCTAAAAAAAAACAATCCCATCTCATTATACCGTTATGGTGCTTTAAGGAGACGAAGCTCTTTGAGATTCTTAGCATAGACGGTGTTTTCCAAACCTTTTGCAGCACAGTTTACTGCATGCTCTGATTTTGTTGCTGTTATATTCAGCAGCTGGAAGTGCTGCTGGGTGGAGGAACAGAAACTTTGTAGGTGCTAAAATATTTTGATGTTACCACGGGATTGTGCGCGGTGCTTCAGATGGTATTTTTAAGTCAGCTTTATTATTCGTTTATTTTTAAATCCATGCATGGGATGCTTTGTAAATAAACCCGAAGTGTTTCAAACGTTGGGTTTTCCAACACTGATAATACATCAGTGTATAAGGAACTGAATTTGGTTTCCTTCAG
Seq C2 exon
GAGATGGTATCGGATACGGACGCCCGCAGGTTAGAGGAATGTATTGCTGAAGAAGGCCGGCTGTTCAAGGAGCAGGAGAAATGCCGCAGTGAGTTATCCAGACTTGCACATCTGACGTGGCTCAAAGTTGAAGAGAAGGAACAGAAATCCAGGGAAGTTCAGAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309:ENSGALT00000013526:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGCCATCCCTAAAATTAATGG
R:
TGGACTTTCTGAACTTCCCTGG
Band lengths:
266-1777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]