BtaINT0034623 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37936449-37937146:+
Coord C1 exon
chr29:37936449-37936553
Coord A exon
chr29:37936554-37937081
Coord C2 exon
chr29:37937082-37937146
Length
528 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
3' ss Seq
TGAGCCTCCCTTTCACACAGGGT
3' ss Score
7.77
Exon sequences
Seq C1 exon
CAGGGCCCTCAGCTGATGACAGCTCCAGCACCTCCTCTGGCGAGTGGTACCAGAACTACCAGCGGCCGCCCCAGCCCCTTTCTGCTGAGCAGTTTGGATGTCCAG
Seq A exon
GTGCCAGTGGTGGGGGTGAGGAAGGATCCTGGGAGGGGACACGGAGAGGGACTGGAGGGTGGATTAATGCAGGAGCTCTGGATACATCAGCTCAAGGGGAAAAGAAGAAAAGTAGTGAGGTTTTTTTTTTTTGTTTATTGTTTTTTTTTTTTTTTAACAAAAAAGAATTTGAGGAGGTAGAGAAAATGAATGAAGGTGGGATGGAGAGAGATTCAAAGACACTACCTTAATAGGAAGTGAGCTCCCCATTAGTGGAAGCATTCAAGCAGAAGCAGCCAGATGGCCCCATGGGGGAGATGGTGGTCACAGAGCAGCTCCCAGCGCTTAGGGACCACAACCCTGCTCTACAAGACTCTGCTTTCAGGACTGACATTCTGTCGAGGGCAGTAATCATGAACAAGATGATAAGATGGTCTCATATAGCATCATGGGGGAGAACGAGGTGGGTCCAGATCCGCTCAGCTCTGTCCCTGCTCAGCAGGGGCAATGACTGGGCCTCTCGCTGACCTGAGCCTCCCTTTCACACAG
Seq C2 exon
GGTCCCATGCTCCCCAGCCTGACTCCTCCTCTGATGAAGAATATGATGATATCGGAGCAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367:ENSBTAT00000047026:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]