RnoINT0032266 @ rn6
Intron Retention
Gene
ENSRNOG00000020884 | Cd6
Description
Cd6 molecule [Source:RGD Symbol;Acc:2312]
Coordinates
chr1:226848403-226849807:-
Coord C1 exon
chr1:226849703-226849807
Coord A exon
chr1:226849320-226849702
Coord C2 exon
chr1:226848403-226849319
Length
383 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
GATTCTCTTGTCCCCCACAGGAC
3' ss Score
10.98
Exon sequences
Seq C1 exon
CAGGGGCCTCGGCCGATGACAGCTCCAGTACCTCGTCTGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGTGGAACAGTTTGAATGTCCAG
Seq A exon
GTAGCCGGGGTGGCGAGGTGGGGGACGTAGAGGATGTGGGTAGGATGGAGAAATATTCGGAAGTTTCTGTAAGAGGAAGTGAGCCTACCGTCAATGGAGGCATTCAAGCAGAGGCTGCTCGCTGGCCACACAGGAGAGGTATCAGTAGTGGACAGGCTGCCAGCATGCACTCATCCACCGTGTACCAGCCTGGGACCCTCAGCTCTGTACTAGACCAGGCTCTGGCTGGAGGCAGCAGTAAACAGAAGGATAGGACGGTTTCAGACGGTGCCTCAGGAGCTGGGGTCGGAGATGGACACAGGTCTGCTCACTCTCACTCTGTCTCCTGGCATGGTGGCAGGGGTAGCCACTGTGCCCCCTACTGATTCTCTTGTCCCCCACAG
Seq C2 exon
GACCGCCTGACCTCCAAGCAGACTCCATTGATGATGATGAGGAAGACTACGATGACATTGGAGCAGCCTAGCCTGGGTCGCCGAGGCTCCTGGGTGACCCCTCCCTCTGCTCTCCTGTTCTACCACCCATCAACTTCTCAGAGGCTGAGGCCCCTGGCAGAGATGGAAGGGTGGGCATTCTCCCAGCCCCGCATCCTCCACCCATTGATTAACCTGCAGGAGCCTGGAACAGAAAGCAGGGCCAATGGTGTGAGTGCTGGGTTGAACGAACAGAGTCTGGCCACTTCTTGGTGGTGGTTGAGGGCCATGCTGGGTAACCCTGAGGCCTCATCTCACTCCATGTCATGTGCTTTGATCCCAAGTCTCAGGAAGCTGCTGAGGGACTGAGCAGCTCACCCGCTGCTGAAATACAGGCCCGAGGCCAGAGGCTGCCATTATCACTCAGCCTCAATACAACCCGGGGCTTTGCATGGGCATGGCTCCCTGGGCACTGTCAGCTAAGAGTAATCAAGACAAGCACATGCTTCCTTCCAGAGTCAGGCCAAGGCCAGTCCTGCCAACCAGAGGCCTCTGAGTCCACCACAGGCACCGGCTGGACTCCTCTCTCTATCCCTGGATAACTAAGCAGTATTCTAATTCCTTGGGCTTTATAGAGGGTCCCTGCCCTGCCTGAGTCAGGAGATGGGCAGCCCAGTTGGGACAAGAATGCAGGGATCTGTCCTGGAGGGCTAGAGGGCACGGACAGCTTCGAGTCCCCACAGATCCCCTTGGGTTGACAGGAACACTCACCCAAGTGAGTGTGGTTATTGCCGGCAAGACCTTAAACGGGTCCTCCCCACAGCCTCAGAGAACTGGAGGGTCCCAGCCAGGCTACAGAGAGCTGTCCTGAGTTCCAGAGATTAAACGATTACTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020884:ENSRNOT00000028347:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGAACTTCCAGCCACCA
R:
GAAGTGGCCAGACTCTGTTCG
Band lengths:
345-728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]