BtaINT0034626 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37926736-37927954:+
Coord C1 exon
chr29:37926736-37927047
Coord A exon
chr29:37927048-37927651
Coord C2 exon
chr29:37927652-37927954
Length
604 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCCCCGCACCCCCTGCAGAGC
3' ss Score
9.5
Exon sequences
Seq C1 exon
ATAAACGCGATTTGAAATTGGTGGGTGGTGGCAGCCCATGTGAGGGCCGCGTGGAGATGCTGGAGCACGGCCAGTGGGGTTCGGTGTGTGACGACACATGGGACCTGGAGGATGCTCACGTGGTGTGCCGGCAGCTGGGCTGCGGCTGGGCCGTCCAGGCCCTGCCCGGCTTGCACTTTGCCCCTGGCCAAGGACGCATCCACTGGGACCAAGTGAACTGCACCGGGTTGGAGACCTACCTGTGGCACTGCCCGGGGCTGCCCGGAAATGGGTACTGTGGCCACAAGGAGGATGCCGGAGTGGTGTGTTCAG
Seq A exon
GTGAGTGGGTGATGCTGAACCAGGGTCATCCAGCACTCACTATAGGCCTGCTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAGAGTTGGTCACCTGGCTCAGTGCAGCAAGGGGAGCTGGAGGCAGGGAGGCCCTGAGGAGGCCGTCAGCGGCTCCCCTGATGAGGAATGAGGTTCTGGTCCAGCCAGGGCTTCTCGAGCCCGAGAATGGAGAGGGAGGAGCAATCTTGTCCAAGGTACATTCTGCGTCAGTAGATCTGAGGCAGGGCTTGAGAGTCTGCATTTCTAACAGGGTCCCAGGTAATGCCGAAGCTGCCAGTCCTTGAACCACGCTTTGAGCAGCAGAGATGTAGACAGCACAGGGTCAGCCAGAGCAGACGGGGTGGACGAGAGGGGCGTGCAGAGGCAGAAGGGAGAGCATCTGGAGACCCCTTGGCTCTGGGGAGTCTGCATCCGTAGGTCAGGGCTGGTGGGGGTTTCCACTCAAAGGATCCTGACCTGACTCTGACCCCCCGCACCCCCTGCAG
Seq C2 exon
AGCACCAGTCCTGGCGCCTGACCGGGGGCACTGACCCCTGTGAGGGGCAGGTGGAGGTGTACTTCCGAGGGGTCTGGAACACAGTGTGTGACAGTGAGTGGTACGACTCAGAGGCCAACGTGCTCTGCCAGGACTTGGGCTGTGGGACCGTGGCCCGGGTGCCCAAGGGGCTGCCCCACTCCTTGTCGGGCAAGATGTTCTACTCATGCAAGGGAAAGGAGTCCACCCTCTCCAAATGCTTCTGGCGGTTCAACAACTCCAACCTCTGCAGACAGTCCCAGGCAGCCAGGGTCCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367:ENSBTAT00000047026:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.4)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGGGACCAAGTGAACT
R:
GAGGGTGGACTCCTTTCCCTT
Band lengths:
344-948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]