BtaINT0034628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37929431-37932240:+
Coord C1 exon
chr29:37929431-37929496
Coord A exon
chr29:37929497-37932099
Coord C2 exon
chr29:37932100-37932240
Length
2603 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTGGGGTTCTTTCTTCCAGACT
3' ss Score
8.45
Exon sequences
Seq C1 exon
GTGCCCGGAGTCTGCTCAATCTGTCCATTACTGAAGTCCCTGCAAGTGGTCAGCCGGTCACTGTGG
Seq A exon
GTGAGTATCCCTGGGGGTAGTTTTTCAGAAGCTTGTTTGCATGCATGCATGGTGTGTGTATGTGTGTGTGTGTCTGAGAGAGGGGTCTGATGGTCTGTCCCCCAACCCCCCACTTCCAGACAATGAACTTGACTCCCCAACTGTCCCTGGGCTCTCTGGGTGTTCTGTGCTCTGCTCATTTCATCTGCCTCTGCATGTCAGCTCCACAGTTCCGTGAATCCTGACATTCCATGGGCAGGAGTCCTCTTCCCACTCTCCATGAGCGCGAGTAGGGCAGGAGGACAGAGCTAGAGAGAGTCAGAGCTGATCTGACACCAGCCAGAGAGTGGGGACGCCGAGGGTAGCAGCCAGTGTGTTTATAATGTGCTGGGCACTGGCCAGGGCTTTACCATCATTATTTCCCAACCCTTTAATCCTCCCAGCAGCCCCCTGGGGAGGTCTTCCCGCAACCCTTACACAGAAGTAGCAGCTCAGGCTCAGAGGGTGGGTTGCCAGCCTGCCACCATTGCCTGGAACCTGCATCTGAGGCTCTTAACTCCGAATCCACACTTGGTCTGTCCTCCAGCTGTGTGTAGCTTAGCCATCACGGGAGTCGACTTCTGGGGCCCAACCCTCAGCTGTACCTCTTGCTAGCTGTGTGATGCTGGGCAATTCTTAACCTCTCTGAGCCTCAGATCCTAGACTACAAAATGAAGATGAGAATCACAGTACTTCTCACCTAGTATTGTTGCTGTGAGTTTCTGGTGAAGAGCACACTTCACAACAGGGCTCAGTACACAGTAAGCACTACCTGGACATCAGTTATTCTTGTTTATTGATTTAGTCCAGGTGTGGAGCCCCTTGGCAGCTCCAGGATAAGCACAGGGGTCAGCCCTCATTCATAGGCTTACTCCTCACTCTGCTCCTGGCTCCCTCTTTCAGATCCTCTCCAGAGGCAATGGGTAGCTTGGGGAGGGGACAGAAGGCCATCAAGTCCTGCCAGAGAACCTGGCTATGGATAAGGCATAGAGAGGGAATGAAAAGCTTTAGGGTGAGCTCCTATCAGGACCCCTACACGTACCCTCTCACACTTTTAATTACTGAGGTTGGGGTAGGGGACCACGCTACCCTCAGAGGAGCAAAGCACTTATGGAGACCTATTCTCCAAGGACCACACTCCAGCCCATGATCCAGCAGCCCCTCCTTCAGCCCCTGACCCTCTTGGCTCATGTTCACAGGTCTCCCCCAGACCCCTAGCCCAGTCTTTGCCTTGTACCTTCTTCCTGCTGCTACATCCAGTTCCCACCCTGGCCCAAACTGCTCCATTTTCAAGAGGAGGGGAGAAAGTGAGGACAGGGAGAGGGGTGATCCTCCTAGTGGGAGCAGACACTGCTGCCAGTCAGGGGGCCTGGGTGAGCTCATCCCCCCAGCCTCCCATGTTACTGTCACTCCCCTTCCTCCAGCCCTGCAGTCTGCACACCCCAGGCCTTCTGCACTGAGCAGGAGATGCTTCATGTCTCTGGGGTGATGAGGATTAGGGTTTCATTGTGGCCTCCATCCATTCTCTGCTCTGCGTTATTTTCAGCAGGGGTGGGGCCAGGAGGGAGGGGAAGGCAAACAGTCACACCAGGGCTTCAGGGCCGGAAGTTCTGGAGTTCTGGCCCTCACTCCTGCCCTCAGGGAATGCACCTCCAGTAGAGGGGATGCATCTGGGCCAAGGGAAGGAGATCTCTCTCTCCTGATGATCTGTTCCCTGCCTGCAGAGGCTCAGAGCCACCTTCTCTGGGAATCCAGCCATGGTCTAACCCACAGAGAATCAGTGTCGCTTGGAGGGATGCACACCTGTCCATACTTTCATCACACCAGGCATCTCACTGAATTGGACTGAGTCAGCTTGTCCATCCATCTTCCCATTAGACAGAGACAGAGACCCTCAAGGCCTGTGACACTACTGTCCTATTTGTCTCCTCAGGTCTAGTGCCTGGCACATTGTAGGTGCTCAGTTATTATTGAGCAGAGACAGATCCATGTGGGCTGGTGGCCAGGAGAAAGTTTCATTCAATGACTCATTCAGTATGCATTTCTCAGGCACCTACTATATACCAGATGGGCTTCCCAGGTGGTACAGTGATAAAGAATCTGCCTGCCAGTGTTAGAGACGCAGGAGATGTGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGTAACCCACTCCAGGATTCTTGCCTGGAGAAACCCATGGACGGAGGAGTCTGTCGGGCTACAGTCCATGGGGTCACAATGAATCAGACACAACTGAGCGACTTCACTTGGGAAGATCCCCTGGAGGAGGAGATAGCAACCCACTCCAGTATTCTTACCTGAAAAATCCCATGGACAGAGGAGCCTGGTGGGCTATAGTCCAGGGGGTCACAAAGAGTCAGACATGACTGAACACACACTATATACAGGGCACCTAAAAGCAGATCGGAAAATTGGGAAAAAAGAAGGGAGGAAGAGGAGAGGTCCAAAAGGGAAGTGGGTCAGGTGCAGAGAGGAAGGAGAGGTAAAACAGACAAGGAAAAGTCCATGTCCATTCCTCTTTCTCCCTGATTTGGGGTTCTTTCTTCCAG
Seq C2 exon
ACTCTTCTGTGATTGTGAAAACGAAGGACTGGGAATCTCGAGAGCTAATGCTCCTCATCCCCTGCATCGTTCTGGGAATTCTCCTTCTCATCTCACTTGTTTTCATAGCCATCATCCTCTTGAGAATGAAAGGAAAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367:ENSBTAT00000047026:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PU(22.8=91.3)
A:
NA
C2:
PF151021=TMEM154=FE(51.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]