HsaINT0031235 @ hg38
Intron Retention
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr11:61011070-61013563:+
Coord C1 exon
chr11:61011070-61011135
Coord A exon
chr11:61011136-61013422
Coord C2 exon
chr11:61013423-61013563
Length
2287 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
ATTGGAATTCTTGTTTCCAGAAT
3' ss Score
5.36
Exon sequences
Seq C1 exon
CTTCCCGGAGTTTGCACAATCTGTCCACTCCCGAAGTCCCTGCAAGTGTTCAGACAGTCACTATAG
Seq A exon
GTAAGTGTTGCTGGGTACTACGCGGTTTCTCAGAAGCTTGGACGTGTGTGTGTGTGTGTGTGTGTGTGTTCCTGTGCACACCTGTGTTGGGGTGGAGGATGGTTTGGTCCTCATCCTCCACCTCCAGCCAATGGACTTGCCTCCCCGGGGCTCTCTGGGTGGCATTTCTGCTCCTTCTACATCCCCTCCTTGCCAAGTCAGCCCATAGATCACTGAGTCCTGATACTTCCTGGACAGAAGTCCATTCCCCCACTTTCCTGTGAGCTGCTGGAGGGCAGAAGGAAAGAGCTGGAGAGAGCTGATACCACCTCAAGCAGGGGTCAGGGTCGGGGCAGCAGGGGGAGGGTGATCTTGGCCCAGCTGGGTAGCGGGAATGCCAGCACACAGCCCTGTGTTCATAACCGGCCAGACACTGGGCCTAGGGCTTTATAGCCATTATTTCCCAACCCTTTAATCCTCTTGGTAGCCAAATGGGAGAGGTCTTATTATAACCCTTACATCAAGAAAGGAGCTGAGGCTCCGAGGCTGAAGTCACAGCTAGAGATTGCTGGCCAGAACTGACAACCAAGGCTCTGAATTCCAGATCCATTCTTGGTCTACCCACCAGCTGCGTGTAGCTTGGCTGGCATCAGAGCAGACTCCCAGGACTCAACTCCCAGCTGTGCCTCTTGCTAGCTGTGCCCTGTTGGGCAACTCGGAACCTCTCTGAGCCTCAGACACCTCAATTATAAAATGGGGGTGATAAGCATATAGTACTTTCTCCTAGCATTGCTGTGAGGCTCCAGTGAATTAATTTTTGTAAAGCACTTAGAACAGAGCCTCAAAGACAGTAAGAACTGTCCGAAAGTCTGCTGTTGCTATGAGTATTTAGTTCAGGCATTGAGCCCCTTTGCAGTCCTGGGATACCCACAGGACTCCCTTGCTCTGCCTCCTAGCTCTCTGTCATCTTCTCTCAGACACCCAGAAGCAGTGAACAGGGGTTTGGGGAGAGGGCACAGAGGCCTTAGCCATAGATGACAGCACAGAGAGGAAATGAAATGTACAACTGCACAGGCTGCCGGGCAAGCTCCTGCCAGGCCCCGCAGGCAACCTGCACACGCTTTCTCTTCCTGAGGTTGGAGTGGGGATCCACGCCATCCTGGAAGGGCAAAGAGTGAAGCACAAAGAGAGATCCAGGGACCACACCCCGGCCCTTGGTCCATCAGCCCCTCCCTCGGCCACGGCCCTCTGTACCCACATTCACGGGTCTCCCCATGGCCGCAACACCCAGCCTCACTCTCACATCTGCTTCCTGCTGCCAGATCCAGCTCCCATCCTGGCCCAAACTTCCCCATTTGCAGACAGAGAGGGGAGAGGAGAAAATGAAGACGGGGAGAGGAGAAAATGAAGACAGGGAGAGGGTTCTCTCCCAGGGGAAGCAGACTCTGCCCCCAGCAAAGAGGTCTGGATGATCTCATCTCCCTCCCCGTTGCTGTCACTACTAGTCATCTAGCCCTGTGGTCTGCTCACTCCAGGAACCCTCCTCACTGACCCCTGTATCCATTCTTGTGCTTCACATTCTTTTAAGCAGAGGGGAGGCTGAGGGAGGGGGAGGGCAAGAAGTCACCCCTGAGTGGGGCTGCAGAGGTGGGAGACCCTGAATCCCAGACCCCACTCCCGTCCTCATGGAGGGGATGTCTGGTGGGAAGGAGGGGGGACTCAGGCACAGCTCTTCTGATGGTCTGTTCACTGCCAGAGGTGGCTCAGAGTCACTGTCTCTGGGAAGTCAGCGTTGGTCTTCCCTCACAGAGAATGAAGTGCCTTTTGTAGGGCCTCATGCCCCCAGTGTCGCTGTTCAAACCTCCATCACAGCGGGTGCCTCATCATACTGGACTGGGTTACTTATTGATCTCTCCGCTAGACAAAGCCCCTCAAGGCCTGTGATACTGTTGTCTTATGTGTAGCCCCAGGGTCTAGGGCCAGGCACACAGCGGGTACTCAATAGTTGTCTATTGAACAAAGACTACATACTGAAGAGCTAGCAGACAGATAGATCTCTGCAGCCTGGTGGCCAGAGTTCTATTTCAGGCAGTAATTCATTTAATCAATTGCTCATGCATTCAATATGCATTTATTGAGCGCCTAATATACACCACACACTTAAAAGCAATGAGAAAATTGGAAAAAGGAAGCAAGGAGGAAGATAACATAAAAAGGGAAGCAGGTCAGCTTTACAGAGAATGGAAAGGCAAGAAGAAGGGTGAGTGCCCATTCCTCTTTCTTCCTGAATTGGAATTCTTGTTTCCAG
Seq C2 exon
AATCTTCTGTGACAGTGAAAATAGAGAACAAGGAATCTCGGGAGCTAATGCTCCTCATCCCCTCCATCGTTCTGGGAATTCTCCTCCTTGGCTCCCTCATCTTCATAGCCTTCATCCTCTTGAGAATTAAAGGAAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725:ENST00000313421:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151021=TMEM154=FE(23.7=100)
A:
NA
C2:
PF151021=TMEM154=PD(52.9=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development