HsaEX0013899 @ hg38
Exon Skipping
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr11:61011070-61015835:+
Coord C1 exon
chr11:61011070-61011135
Coord A exon
chr11:61013423-61013563
Coord C2 exon
chr11:61015713-61015835
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTGGAATTCTTGTTTCCAGAAT
3' ss Score
5.36
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CTTCCCGGAGTTTGCACAATCTGTCCACTCCCGAAGTCCCTGCAAGTGTTCAGACAGTCACTATAG
Seq A exon
AATCTTCTGTGACAGTGAAAATAGAGAACAAGGAATCTCGGGAGCTAATGCTCCTCATCCCCTCCATCGTTCTGGGAATTCTCCTCCTTGGCTCCCTCATCTTCATAGCCTTCATCCTCTTGAGAATTAAAGGAAAATATG
Seq C2 exon
TTTTCATGCTGCCCATCCAGGTCCAGGCCCCGCCCCCTGAGGACTCAGACTCTGGCTCGGACTCAGACTATGAGCACTATGACTTCAGCGCCCAGCCTCCTGTGGCCCTGACCACCTTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725_MULTIEX2-10/13=9-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.476
Domain overlap (PFAM):
C1:
PF151021=TMEM154=FE(23.7=100)
A:
PF151021=TMEM154=PD(52.9=95.8)
C2:
NO
Main Skipping Isoform:
ENST00000313421fB11743
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGAGTTTGCACAATCTG
R:
GTAGAAGGTGGTCAGGGCCA
Band lengths:
186-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development