HsaINT0031236 @ hg38
Intron Retention
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr11:61013423-61014014:+
Coord C1 exon
chr11:61013423-61013563
Coord A exon
chr11:61013564-61013918
Coord C2 exon
chr11:61013919-61014014
Length
355 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTCTGCCTCCCCTCCCTCAGCCC
3' ss Score
8.27
Exon sequences
Seq C1 exon
AATCTTCTGTGACAGTGAAAATAGAGAACAAGGAATCTCGGGAGCTAATGCTCCTCATCCCCTCCATCGTTCTGGGAATTCTCCTCCTTGGCTCCCTCATCTTCATAGCCTTCATCCTCTTGAGAATTAAAGGAAAATATG
Seq A exon
GTAAGTGCAAGGTTCTGGGAGCCATGGCCATCCCAGGGGGATGTGAGCCTTGGCAGAACCCCAGCAGCAGTGGCGTGGTCCAGCAATGACCACCCGGCCCTGGCCCTGGGGAGATCCCCAAGGTGGAAAGGATTTTCCCAGCATGCCCAGCAGTCATGGACGCACCAGCGGGGAGAACCAGACTGTGCATGTGTGTGTGTGCCTGTGTTTGTGTGTGTGTTTGTGCGCGCGCACATGTGCCTGCAAGTGTTGGGGGAATGAGGAGGGTGGTGTGTCGATGAGAACAGAACGGAACCAGGTAGACTGGGAGAGGGCAAAAAAATGACTTGTAGAATTTCTGCCTCCCCTCCCTCAG
Seq C2 exon
CCCTCCCCGTAATGGTGAACCACCAGCACCTACCCACCACCATCCCGGCAGGGAGCAATAGCTATCAACCGGTCCCCATCACCATCCCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725:ENST00000313421:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(52.9=95.8)
A:
NA
C2:
PF151021=TMEM154=PD(5.4=15.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACAGTGAAAATAGAGAACAAGG
R:
CTTCTTTGGGGATGGTGATGGG
Band lengths:
230-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development